Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1197
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 6e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 91 4e-19
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 83 1e-16
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 74 5e-14
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.20
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.61
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 29 1.4
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 29 1.9
SB_39842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 28 4.3
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17) 27 5.7
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 27 7.6
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 27 7.6
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 7.6
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 10.0
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 6e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L++ A TGEFEAG GQTR
Sbjct: 3 VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTR 62
Query: 437 EHALLAFTL 463
EHA+L +L
Sbjct: 63 EHAILVRSL 71
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 82.6 bits (195), Expect = 1e-16
Identities = 35/63 (55%), Positives = 47/63 (74%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALL 451
F+T + T++DAPGH+ F+ NMI+G +QAD VL+I+A GEFE G + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276
Query: 452 AFT 460
A T
Sbjct: 277 AKT 279
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +3
Query: 120 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 254
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTV 210
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 74.1 bits (174), Expect = 5e-14
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 358
IALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 27 IALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 180 MGKGSFKYAWVLDKLKAERERGITI 254
MGKGSFKYAWVLDKLKAERERGITI
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITI 25
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.012
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 240 RGITI 254
RGIT+
Sbjct: 1987 RGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ + +ID+PGH DF + D A++++ +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 30.7 bits (66), Expect = 0.61
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+T ID PGH F G + D VL++ A G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.7 bits (66), Expect = 0.61
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ I+D PGH+DF ++ + D +++I G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 69 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 248
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 249 TI 254
++
Sbjct: 66 SV 67
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 51 THINIVVIGHVDSGKSTTTGHLIY 122
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLII 382
IID PGH F G+S D A+L++
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/45 (22%), Positives = 18/45 (40%)
Frame = +2
Query: 254 HIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITA 388
HI + + + +D PGH F G D ++++ A
Sbjct: 127 HIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_39842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 168 EAQEMGKGSFKYAWVLDKLKAERERGITIILLSGSSKLASTMLPSLMLLD 317
EA +G +F+ A +K K RE+G+TI+ ++ S+ L + +LL+
Sbjct: 27 EALSVGDAAFQ-AKCFNKFKELREQGVTILFVTHSTDLVIKYCQTAILLN 75
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.9 bits (59), Expect = 4.3
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Frame = +3
Query: 33 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 206
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 207 WVLDKLKAERERGI---TIILLSGSSKLASTMLPSLMLL 314
A E + T++ G + L T++ ++
Sbjct: 88 LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
+T++D PGH IK +I G I G E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGGAQ--------IIGECGTIEGGFGQSGKVK 143
>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
Length = 398
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 251 CDTTLTLSL*FVQDPSIFEGSFTH 180
CD+ L L QDP +F GS H
Sbjct: 202 CDSVARLGLLVAQDPVLFSGSLRH 225
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 27.5 bits (58), Expect = 5.7
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = -1
Query: 391 TGSYDEH--SAISLRGSCDHVLDEISVSRSINDGNIVLASFEL-PESNMIV---IPRSRS 230
TG EH S+ S H + + SR D + S + PE++ V +PR S
Sbjct: 699 TGYLSEHYSSSFSTHFEGTHYSNHVPASRPQKDRSRSFTSGDTDPENSTKVAPRLPRKHS 758
Query: 229 AFSLSKTQAYLKDPLP 182
S S+ A+L PLP
Sbjct: 759 EHSSSRFGAHLAPPLP 774
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 275 RTSREQYDCDTTLTLSL*FVQDPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 105
RT+ D TT+T S PS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 302 IDAPGHRDFIKNMITGTSQADCAVLII 382
+D PGH + M+ G + D A+L+I
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLI 95
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 57 INIVVIGHVDSGKSTTTGHLIY 122
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 251 NHIALWKFETSKYYVTIIDAPGHRDFIKNMITG 349
NH+ WK T II P ++D+I ++ G
Sbjct: 266 NHVLQWKDVTRFQKFNIIQDPNNQDYINDVCIG 298
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 153 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
+++ K +EM + K W +KLKAE E
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,339
Number of Sequences: 59808
Number of extensions: 279116
Number of successful extensions: 701
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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