Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1197
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 155 1e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 155 1e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 155 1e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 155 1e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 1e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 91 3e-19
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 91 3e-19
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 85 2e-17
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 57 5e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 57 5e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 57 5e-09
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 54 4e-08
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 54 4e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 39 0.002
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 36 0.011
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.025
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 35 0.033
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.13
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.13
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.40
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.40
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 0.70
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 0.70
AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical ... 30 0.93
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.2
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.2
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 1.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 2.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 6.5
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 155 bits (377), Expect = 1e-38
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 137 bits (332), Expect = 3e-33
Identities = 62/69 (89%), Positives = 66/69 (95%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL++ GTGEFEAGISKNGQTR
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTR 134
Query: 437 EHALLAFTL 463
EHALLA TL
Sbjct: 135 EHALLAQTL 143
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 155 bits (377), Expect = 1e-38
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 90.2 bits (214), Expect = 6e-19
Identities = 38/42 (90%), Positives = 42/42 (100%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLII 382
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL++
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 155 bits (377), Expect = 1e-38
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 137 bits (332), Expect = 3e-33
Identities = 62/69 (89%), Positives = 66/69 (95%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL++ GTGEFEAGISKNGQTR
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTR 134
Query: 437 EHALLAFTL 463
EHALLA TL
Sbjct: 135 EHALLAQTL 143
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 155 bits (377), Expect = 1e-38
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 137 bits (332), Expect = 3e-33
Identities = 62/69 (89%), Positives = 66/69 (95%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL++ GTGEFEAGISKNGQTR
Sbjct: 75 IALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTR 134
Query: 437 EHALLAFTL 463
EHALLA TL
Sbjct: 135 EHALLAQTL 143
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 1e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 216 DKLKAER 236
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 91.5 bits (217), Expect = 3e-19
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALL 451
FETS + ++DAPGH+DFI NMITGTSQAD A+L++ A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 452 AFTL 463
+L
Sbjct: 303 LRSL 306
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/70 (55%), Positives = 53/70 (75%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 224
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 225 KAERERGITI 254
+ ERERG+T+
Sbjct: 227 EEERERGVTM 236
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 91.5 bits (217), Expect = 3e-19
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALL 451
FETS + ++DAPGH+DFI NMITGTSQAD A+L++ A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 452 AFTL 463
+L
Sbjct: 321 LRSL 324
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/70 (55%), Positives = 53/70 (75%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 224
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 225 KAERERGITI 254
+ ERERG+T+
Sbjct: 245 EEERERGVTM 254
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALL 451
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+I+A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 452 AFT 460
T
Sbjct: 242 VKT 244
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/72 (50%), Positives = 52/72 (72%)
Frame = +3
Query: 39 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 218
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 219 KLKAERERGITI 254
ERE+G T+
Sbjct: 164 TNDEEREKGKTV 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 57.2 bits (132), Expect = 5e-09
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHAL 448
++ET+K + ID PGH D+IKNMITG +Q + A+L++ A G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 449 LA 454
LA
Sbjct: 159 LA 160
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 213 LDKLKAER 236
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 57.2 bits (132), Expect = 5e-09
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHAL 448
++ET+K + ID PGH D+IKNMITG +Q + A+L++ A G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 449 LA 454
LA
Sbjct: 160 LA 161
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 213 LDKLKAER 236
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 57.2 bits (132), Expect = 5e-09
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHAL 448
++ET+K + ID PGH D+IKNMITG +Q + A+L++ A G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 449 LA 454
LA
Sbjct: 160 LA 161
Score = 36.3 bits (80), Expect = 0.011
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 212
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 213 LDKLKAER 236
L+ A+R
Sbjct: 106 LEYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 54.4 bits (125), Expect = 4e-08
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = +2
Query: 305 DAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALLA 454
D PGH DFIKNMI GTSQ D AVL+I A G E QT+EH +LA
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILA 156
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTT 107
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 54.4 bits (125), Expect = 4e-08
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = +2
Query: 305 DAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALLA 454
D PGH DFIKNMI GTSQ D AVL+I A G E QT+EH +LA
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILA 156
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTT 107
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/65 (43%), Positives = 34/65 (52%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 240 RGITI 254
RGIT+
Sbjct: 74 RGITV 78
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 36.3 bits (80), Expect = 0.011
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 240 RGITI 254
RGITI
Sbjct: 96 RGITI 100
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ IID PGH DF + D AVL++ G G
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 35.1 bits (77), Expect = 0.025
Identities = 35/123 (28%), Positives = 56/123 (45%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 240 RGITIILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVSL 419
RGIT+ + + + + L L+DT S E R +A+C L + ++ V
Sbjct: 86 RGITVKAQTAALRHRGYL---LNLIDTP-GHVDFSAEVSRSLAVCDGILLLVAANQGVQA 141
Query: 420 RTV 428
+T+
Sbjct: 142 QTI 144
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
Y + +ID PGH DF + + D +L++ A G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.7 bits (76), Expect = 0.033
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 254 HIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
HI + E +K VT +D PGH F G AD VL++ A G
Sbjct: 192 HIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALLA 454
+ +ID PGH I+ ++ ++ D A++II + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLA 120
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 57 INIVVIGHVDSGKSTTT 107
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ + +ID+PGH DF + D A++++ +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ + +ID+PGH DF + D A++++ +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 12 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 122
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 12 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 122
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 278 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ Y + IID PGH +F M AD V+++ A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 278 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ Y + IID PGH +F M AD V+++ A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical
protein Y55D5A.6 protein.
Length = 284
Score = 29.9 bits (64), Expect = 0.93
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 328 EISVSRSINDGNIVLASFELPESNMIVIPRSRSAFSLSKTQAY 200
EI + I + ++L +F+LP+ +M ++P + + +KTQ +
Sbjct: 38 EIGIENLIQEHELILGNFQLPKISMHILPAGEESLT-TKTQNF 79
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 138 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 138 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLII 382
IID PGH F G+S D A+L++
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 57 INIVVIGHVDSGKSTTT 107
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALLAFTL 463
+ +ID PGH I+ ++ ++ D A+ +I+ + G+ G ++ +L
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAI-VISESAKKVRKGLKSMGVDENSPIVEMSL 129
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 290 YVTIIDAPGHRDFIKNMITGTSQADCAVLII 382
+V+ +D PGH + M+ G + D A L++
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLV 158
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLII 382
+ +ID+PGH DF + + +D A+L+I
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLII 382
+ +ID+PGH DF + + +D A+L+I
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 293 VTIIDAPGHRDFI--KNMITGTSQA 361
V IID+ G RDFI KN+ GT+ A
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,415,731
Number of Sequences: 27780
Number of extensions: 208075
Number of successful extensions: 644
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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