Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1196
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 124  YL*KHALIVLFIFFTALA*QTPHVQALFH*FRSFKEIQHAT 2
            YL    + ++F+FF AL      V  LFH F +   I  +T
Sbjct: 1320 YLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTIAHILAST 1360


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 124  YL*KHALIVLFIFFTALA*QTPHVQALFH*FRSFKEIQHAT 2
            YL    + ++F+FF AL      V  LFH F +   I  +T
Sbjct: 1320 YLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTIAHILAST 1360


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 124  YL*KHALIVLFIFFTALA*QTPHVQALFH*FRSFKEIQHAT 2
            YL    + ++F+FF AL      V  LFH F +   I  +T
Sbjct: 1320 YLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTIAHILAST 1360


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 124  YL*KHALIVLFIFFTALA*QTPHVQALFH*FRSFKEIQHAT 2
            YL    + ++F+FF AL      V  LFH F +   I  +T
Sbjct: 1320 YLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTIAHILAST 1360


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 128 IIFVKTRTYCSLYIFYSTSLTDTACTGVISL 36
           IIF     +C  +IF++  L    C    +L
Sbjct: 174 IIFTMHLLFCCAFIFFNMHLLFLLCLDYFTL 204


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 343 NGTGPLSTEEEDERLKQPSGRHRRRCPRNG 432
           NG    S++E+  R  QPS  + R    NG
Sbjct: 352 NGFPKRSSDEQQWRNNQPSTSNNRWHNNNG 381


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/42 (21%), Positives = 16/42 (38%)
 Frame = -1

Query: 415 GVDVGRTAASSARLPPRWTGARCRSGSSLSPSQPFRQLESID 290
           G  + +      + PP + G RC    +   S P     ++D
Sbjct: 273 GTCLDKVGGFECKCPPGFVGPRCEGDINECLSNPCSNAGTLD 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,983
Number of Sequences: 336
Number of extensions: 2764
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)