Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1196
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.33 
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   3.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.2  
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   7.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 23/61 (37%), Positives = 26/61 (42%)
 Frame = -1

Query: 397 TAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVAESFRSHARSSRW 218
           ++ SSA LP   +     S SSLS S P        LSS T  S P   S  S   SS  
Sbjct: 142 SSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAA 201

Query: 217 P 215
           P
Sbjct: 202 P 202


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 439 PAFHFADIGVDVGRTAASSARLPPRWTGARCRSGSSLSPSQPFRQ 305
           P   F D+ +   +   +     PRWT A+C   S  SP  P +Q
Sbjct: 34  PISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEI-SLTSPFHPIKQ 77


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 332 RRSRTAPGPCPPRRKTSA*SSRP 400
           R S TA  P P RRKT   ++RP
Sbjct: 368 RTSPTAAPPPPSRRKTGGLNTRP 390


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 197 DDHYTQNSHTNLNGDRNRH 141
           DDH +Q+ HT+ N   + H
Sbjct: 524 DDHVSQHEHTHENSQEHHH 542


>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 415 RCPRNGTPEARRSSHVLEAVPRRIGT 492
           RC RNG  E R  +H    +PR + +
Sbjct: 73  RCLRNGRTEVRLYTHYKRHLPRSVNS 98


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 349 TGPLSTEEEDERLKQPSGRHRRRCPRNGTPEARRSS 456
           T  +  EE+   + +PS +H+R    NG+    +S+
Sbjct: 95  TAVVKEEEDFNEIAKPSPKHKRVSKANGSKNGAKSA 130


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 275 GLA*QINRLELSEWLRRTQRRSRTAPGPCP-PRRKTSA*SSRPAD 406
           G+   + +++ SE   +     +T P P P P+ K+SA  S+PA+
Sbjct: 346 GITSGLRKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSA-PSKPAE 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,935
Number of Sequences: 5004
Number of extensions: 44928
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)