Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1196
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-relat... 42 4e-04
AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-relat... 42 4e-04
AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin prote... 42 4e-04
AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin prote... 42 4e-04
AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin prote... 42 4e-04
AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin prote... 42 4e-04
AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin prote... 42 4e-04
Z82059-8|CAD89757.1| 207|Caenorhabditis elegans Hypothetical pr... 30 0.92
Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical pr... 30 0.92
Z82059-3|CAB04872.2| 201|Caenorhabditis elegans Hypothetical pr... 29 1.6
U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF039051-12|AAB94258.2| 91|Caenorhabditis elegans Hypothetical... 28 3.7
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 27 6.5
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 27 6.5
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 27 6.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 6.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 6.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 6.5
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 27 6.5
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81066-1|CAB02970.1| 919|Caenorhabditis elegans Hypothetical pr... 27 8.6
U55370-2|AAA97994.1| 561|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-related
protein protein.
Length = 679
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-related
protein protein.
Length = 732
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin protein
1, isoform e protein.
Length = 718
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin protein
1, isoform b protein.
Length = 732
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin protein
1, isoform c protein.
Length = 702
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin protein
1, isoform d protein.
Length = 682
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin protein
1, isoform a protein.
Length = 679
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
RPA I D+ EMERRKRV+ ++ SK F ELE V
Sbjct: 28 RPAVIKEDLSEMERRKRVQQILESKSFCHELEEV 61
>Z82059-8|CAD89757.1| 207|Caenorhabditis elegans Hypothetical
protein T27E9.1c protein.
Length = 207
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 424 ADIGVDVGRTA--ASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSS 281
ADIG ++ T S +PPRW+ S+ SP +L DL S
Sbjct: 147 ADIGKELSSTVPHTSECSIPPRWSSLLMDRNSTSSPLGELLKLSQSDLES 196
>Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical
protein F36G9.8 protein.
Length = 342
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 123 ICKNTHLLFSLYFLQH*LNRHRMYRRYFINFVRSKKFST 7
+C +TH + + NRH YR++ + +RS+KFST
Sbjct: 285 LCMSTHTFLGTLSMLY-FNRH--YRQWLCSIIRSRKFST 320
>Z82059-3|CAB04872.2| 201|Caenorhabditis elegans Hypothetical
protein T27E9.6 protein.
Length = 201
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 358 LSTEEEDERLKQPSGRHRRRCP-RNGTPEARRS 453
L E+EDE L+QP R RR P N P ARR+
Sbjct: 169 LQAEDEDEDLRQP--RRRRHSPDDNDEPAARRN 199
>U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical
protein F20B4.4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = +1
Query: 310 GMAETDSETIPNGTGPLSTEEEDERLK---QPSGRHRRRCPRNGTPEARRS-SHVLEAVP 477
G+ E D+ + N P +T + D PSGR R R G P RS + ++
Sbjct: 10 GLPEVDTPHVDNPEAPEATLQGDSSATAQGNPSGRQSNRRSRRGRPHHLRSPAATIKGTI 69
Query: 478 RRI--GTGPFYQRCTR 519
RI T F+Q +R
Sbjct: 70 TRIVNKTRQFHQEASR 85
>AF039051-12|AAB94258.2| 91|Caenorhabditis elegans Hypothetical
protein C14C6.12 protein.
Length = 91
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 ALEAAVRPTSTPMSAKWNAGSAS-KLSCPRSCSAKNWNG 494
A+EA ++ TP K+ + K CS K WNG
Sbjct: 40 AVEATIKANETPACEKFYGDNGCLKKEIAEQCSEKEWNG 78
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 329 QRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPSTS 508
+RRSR P R+T+ + + REME++K EA EE+ER+ +
Sbjct: 415 ERRSRAFEHEMPEDRETALEKLNRSLHNR--REMEKQKAEEARRKEAERIEEIERMRQQA 472
Query: 509 DARGRR 526
+ R RR
Sbjct: 473 EERRRR 478
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 323 RTQRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPS 502
R +R+ R +P P RR+ RP++ RR+R + S+ +L R PS
Sbjct: 149 RVERKRRRSPSP--KRRR------RPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPS 200
Query: 503 TSDARGRRRS 532
+S ++ RRS
Sbjct: 201 SSRSKSPRRS 210
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 323 RTQRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPS 502
R +R+ R +P P RR+ RP++ RR+R + S+ +L R PS
Sbjct: 149 RVERKRRRSPSP--KRRR------RPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPS 200
Query: 503 TSDARGRRRS 532
+S ++ RRS
Sbjct: 201 SSRSKSPRRS 210
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 316 AETDSETIPNGTGPLS-TEEEDERLKQPSGRHRRRCPRNGTP-EARRSSHVLEAVP 477
+E E +P G PL T+E+ + PSG + P+ P E + EA P
Sbjct: 3532 SEPTQEDVPKGAAPLEPTQEDVPKEAAPSGPTQEDVPKEEAPSEPTQEDVPKEAAP 3587
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 316 AETDSETIPNGTGPLS-TEEEDERLKQPSGRHRRRCPRNGTP-EARRSSHVLEAVP 477
+E E +P G PL T+E+ + PSG + P+ P E + EA P
Sbjct: 3532 SEPTQEDVPKGAAPLEPTQEDVPKEAAPSGPTQEDVPKEEAPSEPTQEDVPKEAAP 3587
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 316 AETDSETIPNGTGPLS-TEEEDERLKQPSGRHRRRCPRNGTP-EARRSSHVLEAVP 477
+E E +P G PL T+E+ + PSG + P+ P E + EA P
Sbjct: 3532 SEPTQEDVPKGAAPLEPTQEDVPKEAAPSGPTQEDVPKEEAPSEPTQEDVPKEAAP 3587
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 329 QRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPSTS 508
+RRSR P R+T+ + + REME++K EA EE+ER+ +
Sbjct: 415 ERRSRAFEHEMPEDRETALEKLNRSLHNR--REMEKQKAEEARRKEAERIEEIERMRQQA 472
Query: 509 DARGRR 526
+ R RR
Sbjct: 473 EERRRR 478
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 377 TSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPSTSDARGRRRSA 535
+S+ + R + AD E ++R + ++ +L RE+ + P RGR R+A
Sbjct: 2 SSSGNGRSNNDRADQLRREEQERKDRELAERLQREQSDDTPPAVARRGRNRAA 54
>Z81066-1|CAB02970.1| 919|Caenorhabditis elegans Hypothetical
protein F17B5.2 protein.
Length = 919
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 297 DSSCRNG*DGLRDDPERHRAPVHRGGRRALEAAVRPTSTPMSAKWNAGSASK-LSCPRSC 473
DSS + +G + H H GG RPT P W+A + + C R
Sbjct: 726 DSSSSSSEEGYYGGKKHHGG--HHGGHHGNRPPPRPTPKPCDDDWHAFYRPQGVWCVRIV 783
Query: 474 SAK-NWNGSLLPAMHEGG 524
+A ++NG+ + GG
Sbjct: 784 AATLDYNGATTACSNLGG 801
>U55370-2|AAA97994.1| 561|Caenorhabditis elegans Hypothetical
protein K03B4.6 protein.
Length = 561
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 401 PDGCFKRSSSSSVDRGPVPFG--IVSESVSAI 312
PDGC KR VD GPV G SES+ ++
Sbjct: 100 PDGCIKRIKYVPVD-GPVEIGKTCFSESIKSV 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,169
Number of Sequences: 27780
Number of extensions: 280166
Number of successful extensions: 930
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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