Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1196
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 137 ARNIIFVKTRTYCSLY 90
           AR +  V+  TYC+L+
Sbjct: 529 ARRVASVRAETYCNLF 544


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 137 ARNIIFVKTRTYCSLY 90
           AR +  V+  TYC+L+
Sbjct: 497 ARRVASVRAETYCNLF 512


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 369 GGRRALEAAVRPTSTPMSAKWNAGSAS 449
           GG+ +  +AVR   +P++    +GS S
Sbjct: 579 GGKTSPNSAVRKCMSPINGSGASGSGS 605


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 388 KQPSGRHRRRCPRNGTPEARRSSHVLEAVPRRIGTGP 498
           KQP    + + P +G P  + S H     P+R G+ P
Sbjct: 5   KQPIITQQSQQPSSGAPGPQPSPHQSPQAPQR-GSPP 40


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 424 ADIGVDVGRTAASSARLPPRW 362
           A+   +V  TA    ++PPRW
Sbjct: 692 ANPAAEVRYTAKLQVKVPPRW 712


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 355 ARCRSGSSLSPSQPFRQL 302
           A C SGSSL+ S+  R L
Sbjct: 134 AACHSGSSLTKSRLMRCL 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,327
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)