Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1192
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 32 0.079
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 29 0.42
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 28 1.3
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 1.7
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 27 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 3.9
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 3.9
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 26 3.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 5.2
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 5.2
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 26 5.2
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 6.9
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 6.9
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 9.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.1
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 9.1
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 31.9 bits (69), Expect = 0.079
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 209 YVERSTQADPADKHLSQNNYAPPQNSYYPQNTYAPPQ 319
Y ++ P + NY PPQ +Y PQ YAPPQ
Sbjct: 7 YGDKGYAPAPPQQAYGGPNYYPPQQNY-PQQGYAPPQ 42
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 269 APPQNSYYPQNTYAPPQN 322
APPQ +Y N Y P QN
Sbjct: 15 APPQQAYGGPNYYPPQQN 32
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 29.5 bits (63), Expect = 0.42
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 227 QADPADKHLSQNNYAPPQNSYYPQNTYAPPQN 322
QA P HLSQ+N PPQ S+ + APP++
Sbjct: 272 QAHPLPSHLSQSN-VPPQLSHSSVPSPAPPRS 302
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/51 (25%), Positives = 19/51 (37%)
Frame = +2
Query: 176 PEPAYPVETSKYVERSTQADPADKHLSQNNYAPPQNSYYPQNTYAPPQNTY 328
P P P S V S D + + PP +PQ +Y P ++
Sbjct: 309 PSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTSF 359
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 380 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNP 490
VP+ + YG + SY YE I + T+ + Y +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 186 PIQWKPQNTWNAPPKPIQPI---NTYPKTIT---PPLKTHTILRIPMHL 314
PIQ +P +T+ A IQP+ ++Y T PP+ T T+ P ++
Sbjct: 185 PIQNRPDSTFTAATTDIQPLWETSSYSVFTTFAGPPIATSTVFASPTYM 233
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +3
Query: 183 PPIQWKPQNTWNAPPKPIQPINTYP---KTITPPL 278
PP + N+PP+PI P++ P T PPL
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL 292
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -3
Query: 523 SPFSPACLFCIGIREVAFL---AYVCSIGDLILVFVTAIITIIHF 398
+PF L +E++ L ++ +IGD +F T I+T + F
Sbjct: 451 TPFLQKLLHIRNTKELSMLKKIGFITAIGDFAWIFTTIIVTTVAF 495
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 320 FEEVHRYSEDSMSFEGGRNCFGISVYRLD 234
F E+H S EGG N F I ++ D
Sbjct: 273 FNEIHTPKMSGASSEGGSNVFKIQYFKTD 301
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 176 PEPAYPVETSKY---VERSTQADPADKHLSQNNYAPPQNSYYPQNT-YAPPQNTYR 331
P+P++P Y + +QA+P + +Q + PPQ S+ P + Y ++YR
Sbjct: 460 PQPSFPPFHPIYNDSIGYYSQANPQMYYANQVSAPPPQGSFDPNSKFYRNSSDSYR 515
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 183 PPIQWKPQNTWNAPPKPIQPINTYP 257
P Q + +APP P+QP+N P
Sbjct: 1365 PKPQIPDSSNVHAPPPPVQPMNAMP 1389
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 149 CIQLVRTFEPEPAYPVETSKYVE--RSTQADPADKHLSQNNYAPPQNSYYPQN 301
CIQ +RTF+ + PV T + +T + P ++ + + +PP S + +N
Sbjct: 110 CIQQLRTFQQQGYIPVITWPNTDSPSATTSSPISRN-PEYSVSPPNGSKFVKN 161
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 302 YSEDSMSFEGGRNCFGISVYRLDRLGWS 219
Y E S+S EGGR C + +D L S
Sbjct: 278 YDESSVSLEGGRYCETVGWLSIDGLAAS 305
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 222 PPKPIQPI-NTYPKTITPPLKTHTILRIPMH 311
PP + P+ N +PK + PPL H +L++ M+
Sbjct: 87 PPHRMTPLRNVWPK-LYPPLVEHLLLQVRMN 116
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 216 NAPPKPIQPINTYPKTITPPLKTHTILR 299
N P QP +T P T +PP+ HT+LR
Sbjct: 155 NTNPINNQPEDTKPNTNSPPV-YHTVLR 181
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 267 TPPLKTHTILRIPMHLLKTPIVPPGARLHIRLRLQQLP 380
T KT+T+L+ P H++ A + I +LQQLP
Sbjct: 172 TDAYKTYTMLKYPAHIVAV------ASISIACKLQQLP 203
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 212 VERSTQADPADKHLS-QNNYAPPQNSYYPQNTYAP 313
V ST + P + L QN+Y P S+Y Q+ P
Sbjct: 369 VPESTASTPKKRILHVQNDYVPHYRSFYQQHEQNP 403
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 225 PKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGARLHIR 359
P+ I TYP+T+TP + I ++ + P PGA+ IR
Sbjct: 373 PRSIAKTLTYPETVTP----YNIYQLQELVRNGPDEHPGAKYIIR 413
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 302 YSEDSMSFEGGRNCFGISVYRLDRLGWS 219
Y E S+S EGGR C + +D L S
Sbjct: 278 YDEASVSLEGGRYCETVGWLSIDGLSAS 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,615
Number of Sequences: 5004
Number of extensions: 54771
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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