Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1192
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0059 - 394001-394708 30 1.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 1.8
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 30 1.8
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 29 2.3
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405... 29 2.3
01_07_0082 - 40965947-40967023 29 2.3
06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,622... 29 3.1
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 29 4.1
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 29 4.1
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 28 5.4
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 7.1
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 7.1
01_01_0070 - 542603-542686,542803-543441 28 7.1
01_01_0046 - 331758-332627 28 7.1
06_02_0024 - 10714741-10716241,10716774-10717840 27 9.4
02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488... 27 9.4
>08_01_0059 - 394001-394708
Length = 235
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = +3
Query: 183 PPIQWKPQNTWNAPPKPIQPINT----YPKTITPPLKTHTILRIPMHLLKTPIVPP 338
PP P APP P PI P+ PP +H + P H+ VPP
Sbjct: 12 PPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPP 67
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 222 PPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGARLHIRLRLQQLPSQ*SRMK 401
PP P +NT PK PP ++ + L P PP R L+ LP + R+
Sbjct: 360 PPPPPPKLNTAPKPPPPPPPPPSV--PSNNNLPKPAEPPAVPTSRRRLLKPLPPEGPRIA 417
Query: 402 CIMVIMAVT 428
M I A T
Sbjct: 418 MPMPITAAT 426
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 272 PPQNSYYPQNTYAPPQNTY 328
PP SY PQ +Y PPQ Y
Sbjct: 221 PPPGSYPPQGSYPPPQGYY 239
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 517 KGWFSYTGADGKVYTVHYWARQR-TGLTHAYRGTIYPTP 630
+G ++ ADG VY V YW R TG+ +G YP+P
Sbjct: 221 RGQGTFRWADGSVY-VGYWTRDAATGIVQQ-KGVYYPSP 257
>04_04_0632 +
26738969-26739350,26739535-26739543,26739674-26740545,
26743048-26743098,26743966-26744127,26744278-26744519,
26744772-26744859,26744964-26745158
Length = 666
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 188 YPVETSKYVE----RSTQADPADKHLSQNNYAPPQNSYYPQNTYAPPQNTY 328
YPV TS VE ST P KH+ + + +N YY TY +T+
Sbjct: 313 YPVSTSPAVEDGLETSTPPGPGVKHVLKASLDDDRNDYYAIGTYDGETDTW 363
>01_07_0082 - 40965947-40967023
Length = 358
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/49 (26%), Positives = 18/49 (36%)
Frame = +2
Query: 170 FEPEPAYPVETSKYVERSTQADPADKHLSQNNYAPPQNSYYPQNTYAPP 316
+ P+ YP T+ A + Q+ Y PP P Y PP
Sbjct: 170 YPPQSTYPPPTAYPTAAKADGSAAAAYPPQSAYPPPGKGNEPSTAYPPP 218
>06_01_0824 -
6219477-6219556,6220427-6220808,6221415-6221448,
6222214-6222370,6224449-6224575,6224663-6224914
Length = 343
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 176 PEPAYPVETSKYVERSTQADPADKHLSQNNYAPPQNSYYPQNT--YAPPQNTYR 331
P PA+ + Y+ R T PA ++ PP Y+P + + PP Y+
Sbjct: 138 PPPAF--QGPPYIARGTPPPPAQMMPQPQHHGPPATIYHPSQSWYWYPPDYQYQ 189
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 218 RSTQADPADKHLSQNNY--APPQNSYYPQNTYAPP 316
++TQ+ P +SQN+ A P Y PQN+++ P
Sbjct: 350 QTTQSQPPSSAVSQNSVTAARPLRGYSPQNSFSAP 384
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 261 TITPPLKTHTILRIPMHLLKTPIVPP 338
T+ PP+KT T LR P + + PP
Sbjct: 163 TVVPPIKTSTTLRTPSPIPPVAVEPP 188
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 203 SKYVERSTQADPADKHLSQNNYAPPQNSYYPQNTYAPPQNTY 328
S +E +T+ADP + N P N Q T +P ++Y
Sbjct: 105 SPSLETATEADPQAAQSNSNTKDTPHNKQQQQQTASPTPSSY 146
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +3
Query: 183 PPIQWKPQNTWNAP---PKPIQPI-NTYPKTITPPLKTHTILRIPMHLLKTPIVPPGA 344
PP+ NT P P P+ P N P PP+ T ++ PMH P GA
Sbjct: 26 PPLAVPATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPSFRPLGA 83
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 164 RTFEPEPAYPVETSKYVERSTQADPADKHLSQNNYAPPQNSYYPQNT 304
+T +P P +TSK ++R D HL ++ P +++ P NT
Sbjct: 336 QTVKPPPPLK-QTSKLLKRREILAKGDVHLENHSCPPASSAHAPSNT 381
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 186 PIQWKPQNTWNAPPKPIQPINTYPKTITPP 275
P+ P APP P+ P P +TPP
Sbjct: 79 PVTPPPPTPKKAPPPPVTPPPVTPPPVTPP 108
>01_01_0046 - 331758-332627
Length = 289
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 222 PPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGARLH 353
PP P P ++ + +PP H IP P+ P RLH
Sbjct: 26 PPPPPPPSSSRYRPPSPPSSRHPHPTIPAARAAPPLGPTNRRLH 69
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 484 REVAFLAYVCSIGDLILVFVTAIITIIHFILDHWDGS 374
R+ + V +I +LV+V +I I+ F LDH DGS
Sbjct: 469 RDASTSINVMAIAGAVLVYV--VIHIVFFTLDHNDGS 503
>02_04_0223 +
21047240-21047304,21047577-21047706,21048783-21048871,
21049592-21049647,21049721-21049776,21050163-21050202,
21050505-21050629,21050715-21050808,21051401-21051480,
21051598-21051640,21057539-21057630,21057746-21057919
Length = 347
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +3
Query: 228 KPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPG 341
KP+ + +TPP+ ++ ++ + P+ PPG
Sbjct: 296 KPLTRLPLVGPLLTPPVSVASVAKVAVRAATDPVFPPG 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,613,853
Number of Sequences: 37544
Number of extensions: 389858
Number of successful extensions: 1267
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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