Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1192
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               29   2.4  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)       29   4.1  
SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)           28   5.5  
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)               28   7.2  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              28   7.2  
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)                27   9.6  

>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +2

Query: 110 STKQKLRPQHGC*CIQLVRTFEPEPAYPVETSKYVERSTQADPADKHLS--QNNYAPPQN 283
           ST+ +L    G  C+  +  ++PE  +      Y        P  K       +Y PP  
Sbjct: 388 STRDQLSKVSGLGCV--IFLYDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHK 445

Query: 284 SYY-PQNTYAPPQNTYR 331
           SY  P  +Y PP  +Y+
Sbjct: 446 SYQPPHKSYQPPHKSYQ 462


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 201 PQNTWNAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGAR 347
           PQ+  N  P  + P+N  P  ++PP     I+  P+++    + PP AR
Sbjct: 297 PQDN-NVRPIMVSPLNVRPIVVSPP-NVRPIVVSPLNVRPIMVSPPNAR 343



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 216 NAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGAR 347
           NA P  + P+N  P  ++PP     IL  P+++    + PP  R
Sbjct: 431 NARPIMVSPLNVRPIMVSPP-NARPILVSPLNVRPIMVSPPNVR 473



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 216 NAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGAR 347
           N  P  + P+N  P  ++PP     I+  P+++    + PP AR
Sbjct: 501 NVGPIVVSPLNVRPIVVSPP-NVRPIVVSPLNVRPIMVSPPNAR 543


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 452 HRRFDTRICNCHYHHNTFHS 393
           HR F    CNCHY +N  +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 26/88 (29%), Positives = 36/88 (40%)
 Frame = +3

Query: 258 KTITPPLKTHTILRIPMHLLKTPIVPPGARLHIRLRLQQLPSQ*SRMKCIMVIMAVTNTS 437
           +TI+  L      R P      P  PPG+R   + +LQ +P   S  K        ++TS
Sbjct: 239 RTISVALSNPPTRRGPPRQEHPPPPPPGSRGRAKTQLQLIPR--SLQKTSSTPHTSSSTS 296

Query: 438 IKSPMEHT*ARKATSRIPIQKRQAGEKG 521
              P     A K  S    Q++ AG KG
Sbjct: 297 SPDPQGRAPASKGES----QEKSAGSKG 320


>SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)
          Length = 322

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 292 SSEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQ 393
           S EY    SKHLS  L H +IS+   + S  +D+
Sbjct: 71  SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104


>SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 422 SYKYEYQIADGTHVGEEGYFTNPNTE 499
           S ++E +I DG   G++G F + NTE
Sbjct: 43  STQWEVKIQDGARTGQKGIFRDDNTE 68


>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
          Length = 925

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 338 RWDDRCFEEVHRYSEDSMSFEGGRNCFGISVYRLDRLGWSVPRIL 204
           RW+ + F+E +RY      FE  R    +      ++GWS+ R++
Sbjct: 150 RWEWQYFDECYRYFRTQTCFENHRR---VKCSVCKKVGWSMDRLV 191


>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
          Length = 361

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 183 PPIQWKPQNTWNAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVP 335
           PP  ++P    ++PP  ++P ++ P T+ P     T +R P H   T + P
Sbjct: 287 PPTAFRP---CHSPPNTVRPCHSPPNTVRPCHSPPTAVR-PCHSPPTAVRP 333


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 183 PPIQWKPQNTWNAPPKPIQPINT---YPKTITPPLKTHTILR 299
           PP     Q+ +N  P   Q  NT    P TITPP   HT+L+
Sbjct: 653 PPKPQHNQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHTLLQ 694


>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 PEPAYPVETSKYVERSTQADPADKH--LSQNNYAPPQNSY 289
           P+P  P+  SK   R T+   A KH  LS   +  P+ S+
Sbjct: 307 PQPTKPLPASKEASRKTKKSAASKHRILSVRLHRKPKKSF 346


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 179 EPAYPVETSKYVERSTQADPADKH-LSQNNYAPPQNSYYPQNTYAPP 316
           +P+YP   S Y+       P   +  +Q +Y P  +SY P     PP
Sbjct: 513 QPSYPPTPSSYLPTQPYYPPPQPYPPTQPSYPPTPSSYPPTQPSYPP 559


>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
          Length = 850

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 359 SDMKACSRWDDRCFEEVHRYSEDSMSFEGGRNCFGISVYRL 237
           SDMK C   D+ C    H  S+   +  GG NC+ +S Y L
Sbjct: 320 SDMKTCIDIDE-CTMTSHGCSQLCNNTLGGYNCYCLSGYSL 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,565,383
Number of Sequences: 59808
Number of extensions: 425527
Number of successful extensions: 1678
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)