BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1192 (633 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34 SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) 29 2.4 SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05) 29 4.1 SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 28 5.5 SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 28 7.2 SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 28 7.2 SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 27 9.6 >SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 520 Score = 32.3 bits (70), Expect = 0.34 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +2 Query: 110 STKQKLRPQHGC*CIQLVRTFEPEPAYPVETSKYVERSTQADPADKHLS--QNNYAPPQN 283 ST+ +L G C+ + ++PE + Y P K +Y PP Sbjct: 388 STRDQLSKVSGLGCV--IFLYDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHK 445 Query: 284 SYY-PQNTYAPPQNTYR 331 SY P +Y PP +Y+ Sbjct: 446 SYQPPHKSYQPPHKSYQ 462 >SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) Length = 1002 Score = 29.5 bits (63), Expect = 2.4 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 201 PQNTWNAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGAR 347 PQ+ N P + P+N P ++PP I+ P+++ + PP AR Sbjct: 297 PQDN-NVRPIMVSPLNVRPIVVSPP-NVRPIVVSPLNVRPIMVSPPNAR 343 Score = 29.5 bits (63), Expect = 2.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 216 NAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGAR 347 NA P + P+N P ++PP IL P+++ + PP R Sbjct: 431 NARPIMVSPLNVRPIMVSPP-NARPILVSPLNVRPIMVSPPNVR 473 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +3 Query: 216 NAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVPPGAR 347 N P + P+N P ++PP I+ P+++ + PP AR Sbjct: 501 NVGPIVVSPLNVRPIVVSPP-NVRPIVVSPLNVRPIMVSPPNAR 543 >SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 975 Score = 29.1 bits (62), Expect = 3.1 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -2 Query: 452 HRRFDTRICNCHYHHNTFHS 393 HR F CNCHY +N +S Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772 >SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 333 Score = 28.7 bits (61), Expect = 4.1 Identities = 26/88 (29%), Positives = 36/88 (40%) Frame = +3 Query: 258 KTITPPLKTHTILRIPMHLLKTPIVPPGARLHIRLRLQQLPSQ*SRMKCIMVIMAVTNTS 437 +TI+ L R P P PPG+R + +LQ +P S K ++TS Sbjct: 239 RTISVALSNPPTRRGPPRQEHPPPPPPGSRGRAKTQLQLIPR--SLQKTSSTPHTSSSTS 296 Query: 438 IKSPMEHT*ARKATSRIPIQKRQAGEKG 521 P A K S Q++ AG KG Sbjct: 297 SPDPQGRAPASKGES----QEKSAGSKG 320 >SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05) Length = 322 Score = 28.7 bits (61), Expect = 4.1 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 292 SSEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQ 393 S EY SKHLS L H +IS+ + S +D+ Sbjct: 71 SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104 >SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 113 Score = 28.3 bits (60), Expect = 5.5 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 422 SYKYEYQIADGTHVGEEGYFTNPNTE 499 S ++E +I DG G++G F + NTE Sbjct: 43 STQWEVKIQDGARTGQKGIFRDDNTE 68 >SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) Length = 925 Score = 28.3 bits (60), Expect = 5.5 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -2 Query: 338 RWDDRCFEEVHRYSEDSMSFEGGRNCFGISVYRLDRLGWSVPRIL 204 RW+ + F+E +RY FE R + ++GWS+ R++ Sbjct: 150 RWEWQYFDECYRYFRTQTCFENHRR---VKCSVCKKVGWSMDRLV 191 >SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) Length = 361 Score = 27.9 bits (59), Expect = 7.2 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 183 PPIQWKPQNTWNAPPKPIQPINTYPKTITPPLKTHTILRIPMHLLKTPIVP 335 PP ++P ++PP ++P ++ P T+ P T +R P H T + P Sbjct: 287 PPTAFRP---CHSPPNTVRPCHSPPNTVRPCHSPPTAVR-PCHSPPTAVRP 333 >SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) Length = 1168 Score = 27.9 bits (59), Expect = 7.2 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +3 Query: 183 PPIQWKPQNTWNAPPKPIQPINT---YPKTITPPLKTHTILR 299 PP Q+ +N P Q NT P TITPP HT+L+ Sbjct: 653 PPKPQHNQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHTLLQ 694 >SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 351 Score = 27.9 bits (59), Expect = 7.2 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +2 Query: 176 PEPAYPVETSKYVERSTQADPADKH--LSQNNYAPPQNSY 289 P+P P+ SK R T+ A KH LS + P+ S+ Sbjct: 307 PQPTKPLPASKEASRKTKKSAASKHRILSVRLHRKPKKSF 346 >SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 650 Score = 27.5 bits (58), Expect = 9.6 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +2 Query: 179 EPAYPVETSKYVERSTQADPADKH-LSQNNYAPPQNSYYPQNTYAPP 316 +P+YP S Y+ P + +Q +Y P +SY P PP Sbjct: 513 QPSYPPTPSSYLPTQPYYPPPQPYPPTQPSYPPTPSSYPPTQPSYPP 559 >SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) Length = 850 Score = 27.5 bits (58), Expect = 9.6 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -2 Query: 359 SDMKACSRWDDRCFEEVHRYSEDSMSFEGGRNCFGISVYRL 237 SDMK C D+ C H S+ + GG NC+ +S Y L Sbjct: 320 SDMKTCIDIDE-CTMTSHGCSQLCNNTLGGYNCYCLSGYSL 359 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,565,383 Number of Sequences: 59808 Number of extensions: 425527 Number of successful extensions: 1678 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1434 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1671 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1584657875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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