Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1192
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.7  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +2

Query: 215  ERSTQADPADKHLSQNNYAPPQNSYYPQNTYAPPQ 319
            +++ Q  P  +   Q    P Q S  PQ     PQ
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQ 1532



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 183  PPIQWKPQNTWNAPP 227
            P + + P N WN PP
Sbjct: 1154 PHLPFTPFNFWNPPP 1168


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 380 VPVIKNEMYYGDNGSYKYEY 439
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 392 KNEMYYGDNGSYKYEYQIADGTHVGEEGYFTN 487
           KNE   G   +YK E  + D   V + G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +3

Query: 351 HIRLRLQQLPSQ*SRMKCIMVIMAVTNTSIKSPMEHT*ARKATSRIPIQKRQAGE 515
           H R     L  +      I+   A  N +  +  E +   KAT+ +  +KR+  E
Sbjct: 727 HFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEKATTSLEAEKREKSE 781


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 508 LVKKGWFSYTGADGKVYTVHYWARQRTGLTHAYRGTIYPTPP 633
           +V +G  SYT  DG+  ++ Y A +        +G+  PT P
Sbjct: 69  VVSQGSDSYTAPDGQQVSITYVADEN---GFQVQGSHIPTAP 107


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 446  RFDTRICNCHYHHNTFHS*SLGRELL*SKSDMKAC 342
            R DT +    YHHN     ++ R  +  ++D K C
Sbjct: 1669 RLDTEMSTWGYHHNVNKHCTIHRTQV-KETDDKIC 1702


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 564 PLLGPTKNWAY 596
           PL+ P  NW+Y
Sbjct: 101 PLIAPYPNWSY 111


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 562 RCKLCHQLQCKRTS 521
           RC +C ++ C R S
Sbjct: 37  RCVICERVYCSRNS 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,979
Number of Sequences: 438
Number of extensions: 4452
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)