Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1189
         (463 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.8  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 130 FNLFSI*PQTLI-LYKRVYYYMRVCVKYTVVCVMFLFIDLMYFF 2
           F LF++    L+ +Y   Y ++  C  + +  +  LF+  +Y+F
Sbjct: 245 FILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF 288



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 133 IFNLFSI*PQTLILYKRVYYYMRVCVKYTVVCVMFLFIDLMYF 5
           IF +  +    LI+   +YY+    + +TV  ++ + I   Y+
Sbjct: 221 IFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYY 263


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 207 FYRYCY 190
           FYRYCY
Sbjct: 255 FYRYCY 260


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 316 HCHFSSLILRAMSATLQL 263
           HCHF   I+  M+  LQ+
Sbjct: 670 HCHFLFHIVIGMNLVLQV 687


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,413
Number of Sequences: 336
Number of extensions: 2038
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)