Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1189
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   1.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   1.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   1.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.3  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   5.6  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   5.6  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   7.4  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 414 RWPSHTALASTWSPLQDLSAPSTVLS 337
           RW ++++ + TW P ++LS  S VL+
Sbjct: 30  RWLNYSSRSDTWEPPENLSGCSAVLA 55


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 395 RLPVRGRHSRIFLPHRPSSLR 333
           R+P  GR S IFLP + S LR
Sbjct: 284 RMPNSGRESTIFLPRKLSGLR 304


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 432 VVGPSSRWPSHTALASTWSPLQDLSAPSTVLSSC-YVGRP 316
           + GP S+  S   L +T    +D+  P   ++SC Y G P
Sbjct: 44  ITGPKSQGASQAMLYATGLNEEDMKKPQVGIASCWYEGNP 83


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 207  FYRYCYLISDFAMT--TLKTNNIKDNQYLIYSQFDHRL*YYTKEYIIICV 64
            F +   L+SDF +   +L+ +N K  +YL    F+  +  +TK+ I +C+
Sbjct: 2392 FNQNSMLVSDFVLPVLSLQFSNSKIAEYLWRDFFNASVCSFTKDEIPLCI 2441


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 351 MGQKDPGVATTYWQAQCGT 407
           +G+K   VA TYWQ + G+
Sbjct: 410 VGEKRCAVADTYWQTETGS 428


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 334 VLCGPAHCHFSSLILRAMSATLQLDNNNLNYKF-EYYYSSIVT 209
           ++C   +CH   ++ R +     L ++NLN K  ++  S+I+T
Sbjct: 140 IICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMT 182


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 350 DGAERSWSGDHVLASAVWDGHLLD 421
           D   + WS DH+    V+ GHL D
Sbjct: 442 DQTAQLWSCDHIYPLRVFAGHLSD 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,185
Number of Sequences: 5004
Number of extensions: 33794
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)