Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1189
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598...    32   0.26 
09_04_0292 - 16436918-16439233                                         28   3.2  
02_02_0317 + 8893593-8894207                                           28   3.2  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    28   4.2  
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234...    27   5.6  
05_04_0052 - 17515344-17517353                                         27   7.3  
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633...    27   7.3  
03_02_0390 + 8056006-8057502                                           27   9.7  
01_06_1179 - 35161229-35162368                                         27   9.7  

>09_04_0108 +
           14657020-14657193,14659040-14659355,14659728-14659887,
           14661265-14661725,14663778-14663856,14664732-14664882,
           14665414-14665467,14665724-14665888
          Length = 519

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 449 PALFTRSSVHLVGGRPTLRLPVRGRHSRIFLPHRPSSLRAMWAGPLPLQF 300
           P   T   V +VGG     + VR     +  P   +++   WAGPLP+ F
Sbjct: 159 PVANTDGEVVVVGGGHAATIAVRAAGKGLIRPSGIAAVAPTWAGPLPIVF 208


>09_04_0292 - 16436918-16439233
          Length = 771

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 391 CQYVVATPGSFCPIDRPLFVLCGPAHCHFSSLILRAMSATLQLDNNNLNYKFEYYYSSI 215
           CQYV+        +D PL VLC   H + S     A++    LDN    Y+ +   S++
Sbjct: 420 CQYVLKVSWHRARVDTPLKVLC---HFNVSRYWKNAINQYSLLDNAGYLYRVQLLLSTL 475


>02_02_0317 + 8893593-8894207
          Length = 204

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +1

Query: 319 PAHIARREDG-RWGRKILEWRPRTGKRSVGRPPTRWTDDLV----KSAGSRW 459
           P   A  E G R GR+   WRP  G+ +    PT W  D V    + +GSRW
Sbjct: 68  PVGEAGEESGSRCGRR---WRPGGGRDTDPHSPTSWRLDPVGEAGEESGSRW 116


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -1

Query: 400 HCACQYVVATPGSFCPIDRPLFVLCGPAH-CHFSSLILRAMSATLQLDNNNLNYK-FEYY 227
           HC+       P   C  D PLF LC        +S+ L  +   L  D  ++N +  E Y
Sbjct: 632 HCSFMLAEGNPNDLCTSDLPLFGLCSAMDGIREASVRLDGLRFILLADGTSMNVEGTEVY 691

Query: 226 YSSIV 212
              ++
Sbjct: 692 VDDVM 696


>08_02_0940 -
           22822391-22822781,22822875-22823053,22823079-22823428,
           22823522-22823765
          Length = 387

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 356 PHRPSSLRAMWAGPLPLQFT 297
           PHRPSS  A++A PL    T
Sbjct: 354 PHRPSSFAALFAAPLGFPLT 373


>05_04_0052 - 17515344-17517353
          Length = 669

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 461 IQRDPALFTRSSVHLVGGRPTLRLPVRGRHSRIFLPHRPSSL 336
           +QRD  L   + V   GG+P +R+ VRG   R+  P   S++
Sbjct: 119 VQRDMRLLPFAVVDK-GGKPHVRVEVRGGDVRLLSPEEVSAM 159


>01_02_0019 +
           10262685-10262909,10263014-10263076,10263155-10263316,
           10263407-10263589,10263676-10263806,10264251-10264419,
           10264524-10264653,10265702-10265898
          Length = 419

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 354 GQKDPGVATTYWQAQCGTATY*MDRR 431
           GQ+D  VA  Y   QCG A Y +DRR
Sbjct: 182 GQEDSHVALCYL-TQCGKARYIVDRR 206


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 359 LPHRPSSLRAMWAGPLPLQFTN-STGYVSNLTT 264
           LPH P SL    AG L L FT+ ++   S+ TT
Sbjct: 17  LPHFPPSLADAGAGALDLSFTSTASASTSSFTT 49


>01_06_1179 - 35161229-35162368
          Length = 379

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 437 TRSSVHLV-GGRPTLRLPVRGRHSRIFLPHRPSSLRAMWAGPL 312
           T+SSV +   GR    LP   RH  + LPHR S      AG L
Sbjct: 44  TQSSVAVSRAGRACRPLPNTPRHGALSLPHRASYYYTPRAGDL 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,901,686
Number of Sequences: 37544
Number of extensions: 225221
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)