Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1189
         (463 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131729-1|AAI31730.1|  538|Homo sapiens NPHP3 protein protein.        34   0.21 
AY257864-1|AAP83423.1| 1330|Homo sapiens nephrocystin 3 protein.       34   0.21 
AK055253-1|BAB70891.1|  711|Homo sapiens protein ( Homo sapiens ...    34   0.21 

>BC131729-1|AAI31730.1|  538|Homo sapiens NPHP3 protein protein.
          Length = 538

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 426 GPSSRWPSHTALASTWSPLQDLSAPSTVLSSCYVGRPIATS 304
           GP S     + L S W  LQ  ++P+T++ S +VGRP++TS
Sbjct: 433 GPGS---GKSLLLSKWIQLQQKNSPNTLILSHFVGRPMSTS 470


>AY257864-1|AAP83423.1| 1330|Homo sapiens nephrocystin 3 protein.
          Length = 1330

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 426 GPSSRWPSHTALASTWSPLQDLSAPSTVLSSCYVGRPIATS 304
           GP S     + L S W  LQ  ++P+T++ S +VGRP++TS
Sbjct: 531 GPGS---GKSLLLSKWIQLQQKNSPNTLILSHFVGRPMSTS 568


>AK055253-1|BAB70891.1|  711|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30691 fis, clone FCBBF2000591, weakly similar to
           KINESIN LIGHT CHAIN. ).
          Length = 711

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 426 GPSSRWPSHTALASTWSPLQDLSAPSTVLSSCYVGRPIATS 304
           GP S     + L S W  LQ  ++P+T++ S +VGRP++TS
Sbjct: 204 GPGS---GKSLLLSKWIQLQQKNSPNTLILSHFVGRPMSTS 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,464,512
Number of Sequences: 237096
Number of extensions: 1282928
Number of successful extensions: 3843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3843
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)