Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1189
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    63   1e-10
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    63   1e-10
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    63   1e-10
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    62   2e-10
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    58   4e-09
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    36   0.019
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    27   6.5  
U41995-6|AAA83463.2|  419|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 262 RVVRLLT*PVELVN*SGNGPA-HIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLV 438
           R + L+  P+  V     G A H+ARR+DGRW   + EWRP   KR VGRPP RWTD L 
Sbjct: 795 RTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 854

Query: 439 KSAGSR 456
           K   +R
Sbjct: 855 KEITTR 860


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 262  RVVRLLT*PVELVN*SGNGPA-HIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLV 438
            R + L+  P+  V     G A H+ARR+DGRW   + EWRP   KR VGRPP RWTD L 
Sbjct: 970  RTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 1029

Query: 439  KSAGSR 456
            K   +R
Sbjct: 1030 KEITTR 1035


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 262 RVVRLLT*PVELVN*SGNGPA-HIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLV 438
           R + L+  P+  V     G A H+ARR+DGRW   + EWRP   KR VGRPP RWTD L 
Sbjct: 709 RTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLR 768

Query: 439 KSAGSR 456
           K   +R
Sbjct: 769 KEITTR 774


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +1

Query: 325 HIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLVKSAGSR 456
           H+ARR+DGRW   + EWRP   KR VGRPP RWTD L K   +R
Sbjct: 343 HVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTR 386


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 24/44 (54%), Positives = 28/44 (63%)
 Frame = +1

Query: 325 HIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLVKSAGSR 456
           H+ARR DGRW   + +W PR  KR VGRPP RW D L K   +R
Sbjct: 128 HVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTR 171


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 325 HIARREDGRWGRKILEWRP---RTGKRSVGRPPTRWTDDL 435
           HI RR+  RW +   EW P   +  KR+VG    RW  D+
Sbjct: 219 HILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 391 KRSVGRPPTRWTDDLVKSAGSRWM 462
           KR VG+PP RWTD L K   +R M
Sbjct: 14  KRPVGKPPMRWTDSLRKEITTRDM 37


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 422 HLVGGRPTLRLPVRGRHSRI 363
           HL G +P  R P RGRH R+
Sbjct: 457 HLTGNQPDPRQPKRGRHQRV 476


>U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical
           protein T03G6.3 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 384 YWQAQCGTATY*MDRRPSKKRWVSLD 461
           YW A C  A Y M  +  +KRW +LD
Sbjct: 136 YWFAHCHRAFYDMVVQVPEKRWANLD 161


>AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical
           protein Y38F1A.8 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 382 VVATPGSFCPIDRPLFVLCGPAHCHFSSLILRAMSATLQLDNNNLNYKFEYY 227
           V+   G FC I  P+      AHC   +  L +++  +++  N+L Y   Y+
Sbjct: 214 VIFLVGYFCAISTPITYPYFTAHCSPYAYNLFSLAELIEVGCNSLFYSIAYF 265


>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 192 YLISDFAMTTLKTNNIKDNQYLIYSQFDHRL*YYTKEYIIICVCVS 55
           + I  F+M   K  NI     +I S+F     YY   +I+IC+ ++
Sbjct: 58  FWIVPFSMLEFKIQNIPRTLNVIVSEFVGIFTYYFGPFILICMSIN 103


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 340 LFVLCGPAHCHFSSLILRAMSATLQLDNNNLNYKFEYYYSSIV 212
           +F +C P   +F   I R  S T+ L       + +++YS  +
Sbjct: 203 MFFICLPQKLYFLGAIFRYFSQTVSLSATTARLQKQFFYSMCI 245


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 340 LFVLCGPAHCHFSSLILRAMSATLQLDNNNLNYKFEYYYSSIV 212
           +F +C P   +F   I R  S T+ L       + +++YS  +
Sbjct: 203 MFFICLPQKLYFLGAIFRYFSQTVSLSATTARLQKQFFYSMCI 245


>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 350 RPSSLRAMWAGPLPLQFTNSTG 285
           RPS + AMW GPLP    N  G
Sbjct: 229 RPSIVGAMWQGPLPGWTDNING 250


>U41995-6|AAA83463.2|  419|Caenorhabditis elegans Hypothetical
           protein E02C12.6 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 186 ISDFAMTTLKTNNIKDNQYLIYSQFDHRL*YYTKEY 79
           +  F+  T K++NI+   Y + ++F+H    YTK Y
Sbjct: 103 LKKFSKLTRKSHNIEVETYKVLTKFNHPDIPYTKVY 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,757
Number of Sequences: 27780
Number of extensions: 190542
Number of successful extensions: 536
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)