Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1188
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 134 7e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 130 1e-31
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 64 1e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 28 0.87
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 0.87
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.1
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 2.0
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 3.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.6
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 4.6
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 8.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 134 bits (325), Expect = 7e-33
Identities = 67/148 (45%), Positives = 82/148 (55%)
Frame = +1
Query: 76 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGN 255
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 256 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLERKS*DLVLD 435
P F L+ ++ + ++ D V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 436 RIRKLADQCTGLQGFLIFHSFGGGTALG 519
+IR++AD C+GLQGFL+FHSFGGGT G
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSG 148
Score = 121 bits (292), Expect = 7e-29
Identities = 61/121 (50%), Positives = 79/121 (65%)
Frame = +3
Query: 219 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 398
F F ++VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 399 TIGKEIVRFGFGQNPQAR*PVYRSARIPDLPLLRWRYGSGFTSLLMERLSVDYGKKSKLE 578
T+GKE+V + + GSGF +LL+ERL+++Y KKSKL+
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168
Query: 579 F 581
F
Sbjct: 169 F 169
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 130 bits (314), Expect = 1e-31
Identities = 71/153 (46%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Frame = +1
Query: 76 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 240
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 241 TGAGNTYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLERKS* 420
TG G P F ++ ++ + ++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 421 DLVLDRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D VL+RIR++AD C+GLQGFL+FHSFGGGT G
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
Score = 116 bits (278), Expect = 3e-27
Identities = 56/121 (46%), Positives = 77/121 (63%)
Frame = +3
Query: 219 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 398
F F + VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 399 TIGKEIVRFGFGQNPQAR*PVYRSARIPDLPLLRWRYGSGFTSLLMERLSVDYGKKSKLE 578
T+GKE++ + + GSG +LL+ERL+++YGKKS L+
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQ 172
Query: 579 F 581
F
Sbjct: 173 F 173
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 64.1 bits (149), Expect = 1e-11
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = +3
Query: 252 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI 416
++VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112
Score = 61.3 bits (142), Expect = 1e-10
Identities = 40/148 (27%), Positives = 57/148 (38%)
Frame = +1
Query: 76 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGN 255
MRE + + GQ G Q+G A W EHG+ G T + N +F+E G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 256 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLERKS*DLVLD 435
P + F +N++ + + D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 436 RIRKLADQCTGLQGFLIFHSFGGGTALG 519
+R+ A+ C LQGF + HS GGGT G
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSG 146
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.7 bits (138), Expect = 3e-10
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Frame = +1
Query: 79 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGNT 258
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 259 YPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRK--MRXXXXXXXXXXLERKS*DLVL 432
P S + N+L+ + ER D ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFED-IM 119
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D I + AD L+GF + HS GGT G
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSG 148
Score = 52.0 bits (119), Expect = 6e-08
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Frame = +3
Query: 228 FLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 401
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 402 IGKEIVRFGFGQNPQAR*PVYRSARIPDLPLLRWRYGSGFTSLLMERLSVDYGKK 566
+ I + L + GSG S L+ERL+ Y KK
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKK 164
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 564 SCRSQRRDAPSIRK*TQSRTSTEGVEDQESLQTGTLVSELADSVQN 427
S + SIR ++SR+S+ G + Q S+Q+GT ++D ++
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 0.87
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 495 GVED-QESLQTGTLVSELADSVQNQILRFPFQWCS 394
G+E+ ESL TL+ + ++++ L+ P +W S
Sbjct: 128 GIEEPSESLHVFTLLKSIVQGIRDKDLKLPIEWAS 162
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 311 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 207
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 510 RTSTEGVEDQESLQTGTLVSELADSVQNQILRFPFQWCS 394
R ST GV + TG++ L S Q + P WCS
Sbjct: 401 RYSTFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCS 439
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 344 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 177
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 476 PCRPVHWSASLRILSKTKSYDF 411
P +PVHW + I T+ DF
Sbjct: 1403 PLKPVHWISLFEITKSTEQLDF 1424
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 174 WPDAHRQDHRGWRRFFQHFLQR 239
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 278 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 168
++D T Y+ P P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 65 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 187
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 155 STASSLMARCPQTRPSGVETILSTLSSARP 244
ST SSL + ++PS T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 129 ITDLDSGLANVYRDALTHFDLSF 61
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,043
Number of Sequences: 5004
Number of extensions: 53872
Number of successful extensions: 191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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