Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1186
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    26   5.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.3  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.2  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   EIPTAPEGQALVKPNGHGLFSQPRAPPK 84
           EIP  PE + +  P      ++P APPK
Sbjct: 82  EIPPEPEQEVVASPVTEQKKAEPSAPPK 109


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 202 PRRPSSSGKTSTVQRPRPNQLKERNSNLP 288
           P RP+S+G++S   R R + L +    LP
Sbjct: 538 PNRPASNGRSSLFSRGRASNLGDVGLRLP 566


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 241 QRPRPNQLKERNSNLPDLKL*TSQERRKDQKNMMTIIITNL 363
           ++ R NQL++     P+LK+   +  + DQ+  +  I+ ++
Sbjct: 637 RKRRSNQLEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSI 677


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 7   PTAPEGQALVKPNGHGLFSQPRAPPKIKRPVPLSEK 114
           P +PEG+ L +   H     P    + +RPV   +K
Sbjct: 119 PFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDK 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,028
Number of Sequences: 5004
Number of extensions: 40660
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)