Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1186
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0116 + 8463755-8463951,8464016-8464097,8471823-8472338           27   9.5  
11_01_0281 + 2086674-2087652,2089200-2089483                           27   9.5  
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206...    27   9.5  

>11_02_0116 + 8463755-8463951,8464016-8464097,8471823-8472338
          Length = 264

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 630 WCLKGSLSDPCRRRAANPRGRYGLPPL 550
           W   GS +  CRRR  N + + G PP+
Sbjct: 139 WFHDGSSASACRRRRPNMKEQRGSPPM 165


>11_01_0281 + 2086674-2087652,2089200-2089483
          Length = 420

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 217 SSGKTSTVQRPRPNQLKERNSNLPDLKL*TSQERRKDQKNMMTIIITNLLGNLRDYPILE 396
           SSG    V  P P    ERN + PDL +  S+  + D+  +    +T   G+ + Y ++ 
Sbjct: 149 SSGDDELVLTPAPRFAAERNDDAPDLPVLLSRVFKSDKVEVSDDRLT--AGSTKGYRMVR 206

Query: 397 KKR 405
             R
Sbjct: 207 ATR 209


>11_01_0277 +
           2060328-2061061,2061360-2061420,2061560-2061679,
           2061947-2062112,2062229-2062635
          Length = 495

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 217 SSGKTSTVQRPRPNQLKERNSNLPDLKL*TSQERRKDQKNMMTIIITNLLGNLRDYPILE 396
           SSG    V  P P    ERN + PDL +  S+  + D+  +    +T   G+ + Y ++ 
Sbjct: 147 SSGDDELVLTPAPRFAAERNDDAPDLPVLLSRVFKSDKVEVSDDRLT--AGSTKGYRMVR 204

Query: 397 KKR 405
             R
Sbjct: 205 ATR 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,420
Number of Sequences: 37544
Number of extensions: 289459
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)