Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1183
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0364 + 2615056-2615239,2615573-2615637,2616016-2616103,261...    31   0.87 
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    29   2.7  
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512...    28   4.6  
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667...    28   6.1  
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009...    28   6.1  

>02_01_0364 +
           2615056-2615239,2615573-2615637,2616016-2616103,
           2616202-2616269,2616653-2616703,2617168-2617285,
           2617463-2617509,2617603-2617629,2617806-2617881,
           2618157-2618296,2618623-2618721
          Length = 320

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 375 PHSSENETPTSDNDNQSLKNTKSTQTP------KVKTSDTATQMETMKTKNVRKA*K 527
           PH+S+N+    D D    K  +  + P      K K +  AT+  T KT+  ++  K
Sbjct: 261 PHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKATKKGTRKTQTTKRTKK 317


>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 399 PTSDNDNQSLKNTKSTQTPKVKTSDTATQMETMKTKNVRKA 521
           P    + +  K  K T+TP  ++     Q ET + K  RKA
Sbjct: 418 PQRKRNGEKEKKAKPTETPSAESFKKGAQKETKEEKKARKA 458


>07_03_0284 +
           16249497-16249993,16250950-16251069,16251166-16251298,
           16251867-16252031,16253289-16253459
          Length = 361

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 517 FLTFFVFIVSICVAVSLVFTLGVC 446
           FL F VF V  CVA++ V  + VC
Sbjct: 211 FLAFDVFFVVFCVALACVIGIAVC 234


>04_04_0839 -
           28565732-28565908,28566380-28566544,28566656-28566788,
           28566888-28567007,28568361-28568740
          Length = 324

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 517 FLTFFVFIVSICVAVSLVFTLGVC 446
           FL F VF V  CVA++ +  + VC
Sbjct: 172 FLAFDVFFVVFCVALACIIGIAVC 195


>02_05_0285 -
           27498946-27499122,27499944-27500108,27500828-27500960,
           27501052-27501171,27502436-27502980
          Length = 379

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 517 FLTFFVFIVSICVAVSLVFTLGVC 446
           FL F VF V  CVA++ +  + VC
Sbjct: 227 FLAFDVFFVVFCVALACIIGIAVC 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,944,336
Number of Sequences: 37544
Number of extensions: 258386
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)