Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1183
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical pr... 29 1.8
AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 29 2.4
Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.1
U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF099925-1|AAC69506.1| 170|Caenorhabditis elegans Hypothetical ... 29 3.1
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 28 4.1
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL032631-12|CAA21576.1| 138|Caenorhabditis elegans Hypothetical... 28 4.1
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 4.1
AF003134-2|AAB54141.5| 691|Caenorhabditis elegans Hypothetical ... 28 4.1
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 28 5.5
U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical pr... 28 5.5
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 28 5.5
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 28 5.5
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 28 5.5
AL110477-15|CAB54331.2| 295|Caenorhabditis elegans Hypothetical... 28 5.5
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 28 5.5
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 28 5.5
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z66520-9|CAA91390.2| 335|Caenorhabditis elegans Hypothetical pr... 27 7.2
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 27 7.2
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 27 7.2
U51999-2|AAA96083.2| 327|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF125459-8|AAD12840.2| 317|Caenorhabditis elegans Serpentine re... 27 9.5
AF038613-3|AAB92050.2| 102|Caenorhabditis elegans Hypothetical ... 27 9.5
AC006795-2|AAF59493.3| 421|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical
protein K04B12.2b protein.
Length = 381
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTAT 482
KN+ ++ + Q LN+P SS + +SD++ L ++TP V + T
Sbjct: 39 KNLINERVSEAVQAGSSSLNMPSSSSSSCTSSDSEESELSLPARSRTPSVCAERSTT 95
>Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical
protein K04B12.2a protein.
Length = 420
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTAT 482
KN+ ++ + Q LN+P SS + +SD++ L ++TP V + T
Sbjct: 78 KNLINERVSEAVQAGSSSLNMPSSSSSSCTSSDSEESELSLPARSRTPSVCAERSTT 134
>AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical
protein Y102A11A.6 protein.
Length = 286
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 511 TFFVFIVSICVAVSLVFTLGVCVDLVFF 428
+F+ F+ SIC V FT+ +D FF
Sbjct: 244 SFYAFLTSICAVVGGTFTVAGIIDSTFF 271
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 387 ENETPTSDNDNQSLKNTKSTQTPKVKTSDTAT 482
ENE +D D+ +NT+ +TP K S T+T
Sbjct: 1277 ENENVLTDEDDSDGENTRKRKTPTSKKSVTST 1308
>Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 317 VLFFQTLF*FFYDNVLLFNTLLILMINS 234
+LFF+ L FF+ N LLF+ L ++I++
Sbjct: 69 ILFFRNLLEFFFINQLLFSILEFILISA 96
>Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 317 VLFFQTLF*FFYDNVLLFNTLLILMINS 234
+LFF+ L FF+ N LLF+ L ++I++
Sbjct: 69 ILFFRNLLEFFFINQLLFSILEFILISA 96
>U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical
protein C31H1.5 protein.
Length = 315
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 378 HSSENETPTSDNDN----QSLKNTKSTQTPKVKTSDTATQME--TMKTKNV 512
H E+ T TS D + KNT TQ PK T+++ +E T++ K +
Sbjct: 246 HYKEDTTTTSTTDTTTTISTTKNTTVTQKPKTNTTNSTVTIEETTLEEKTI 296
>AF099925-1|AAC69506.1| 170|Caenorhabditis elegans Hypothetical
protein K01A2.6 protein.
Length = 170
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 357 VFELNIPHSSENETPTSD-NDNQSLKNTKSTQTPKVKTSDTATQMET 494
V E++I + + N P + + N ++ N K+ PK K D+ QME+
Sbjct: 28 VMEISIRNGTSNTIPVLNVSANYNINNNKA-YNPKTKNDDSCKQMES 73
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQ 485
++ R T+ + + + H +NE S+N+N SLK+ S+ T ++ + + Q
Sbjct: 382 RSSRDTAEQKIKDIEIAKEKVDHLLQNERQRSENENGSLKSKLSSATKQIHSLEKELQ 439
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQ 485
++ R T+ + + + H +NE S+N+N SLK+ S+ T ++ + + Q
Sbjct: 384 RSSRDTAEQKIKDIEIAKEKVDHLLQNERQRSENENGSLKSKLSSATKQIHSLEKELQ 441
>AL032631-12|CAA21576.1| 138|Caenorhabditis elegans Hypothetical
protein Y106G6H.13 protein.
Length = 138
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 309 EKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTAT 482
EKN ++N+S +N P S ++ + ND S + + Q+P + T+D T
Sbjct: 72 EKNPNQLTMNSSVMDNQQYFAPPKSESSQYAWNTNDVVSSHHQYAAQSPNIYTNDYHT 129
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 330 SINASSQNNVFELNIPHSSENETPTSDNDNQ--SLKNTKSTQTPKVKTSDTAT 482
S+N++ N+ + H+ TPT D N+ ++ N +TQTP V TS AT
Sbjct: 188 SLNSTDMNSRYG-EAAHNIPT-TPTEDISNKINNILNIGTTQTPPVTTSTMAT 238
>AF003134-2|AAB54141.5| 691|Caenorhabditis elegans Hypothetical
protein ZC581.3 protein.
Length = 691
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 321 RTTSIN-ASSQNNVFELNIPHSSENETPTSDNDNQSL 428
RT+ IN A +QN++ EL+ H + ET TS++ N L
Sbjct: 315 RTSEINGAFTQNSILELD--HVTSPETSTSESGNDDL 349
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +3
Query: 321 RTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQMETMK 500
R S N SS NNV + HS + + D + + TP +T+ T +
Sbjct: 425 RPMSNNNSSSNNVPSVQEQHSVPKKEEVRELDYRPYEKENGVHTPNAETNSTQGNSSPIS 484
Query: 501 T 503
T
Sbjct: 485 T 485
>Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical
protein F09E8.6 protein.
Length = 503
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 372 IPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQMETMKTKNV 512
+P + E E ++ + + ST TPK T+ T+ E + KN+
Sbjct: 429 VPRNKEKENKSASSTTRGTSTATST-TPKTTTTTTSAPKEKCEDKNL 474
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQME 491
K+ TTSI+ S+ + E E +TP + + S + ST T ++ +T
Sbjct: 61 KSPTTTSISTSTVSTTPERLTKPYEETDTPIPTHSSPSTSTSTSTSTSTSTSTSRSTSTV 120
Query: 492 TMKTKN 509
T T++
Sbjct: 121 TPTTRS 126
>U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical
protein F36D4.4 protein.
Length = 472
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 508 FFVFIVSICVAVSLVFTLGVCVDLVFFK-DWLSLSEVGVSFSLLCGIFNSNTLF 350
F + I++IC +S++ LG+ + +WL E G+ F+ + + S+ F
Sbjct: 149 FVLIILAICWTMSIMMALGILYSSSKSQTEWLPPEERGIDFATITMVLISSLCF 202
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 318 VRTTSINASS-QNNVFELNIPHSSENETPTSDNDNQSLKN-TKST 446
V T S N+++ QNN N P S+ + TS ND +N T ST
Sbjct: 537 VHTNSTNSTNHQNNGLTQNAPASTSMQAGTSSNDGVISQNGTSST 581
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 318 VRTTSINASS-QNNVFELNIPHSSENETPTSDNDNQSLKN-TKST 446
V T S N+++ QNN N P S+ + TS ND +N T ST
Sbjct: 305 VHTNSTNSTNHQNNGLTQNAPASTSMQAGTSSNDGVISQNGTSST 349
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 318 VRTTSINASS-QNNVFELNIPHSSENETPTSDNDNQSLKN-TKST 446
V T S N+++ QNN N P S+ + TS ND +N T ST
Sbjct: 537 VHTNSTNSTNHQNNGLTQNAPASTSMQAGTSSNDGVISQNGTSST 581
>AL110477-15|CAB54331.2| 295|Caenorhabditis elegans Hypothetical
protein Y113G7B.9 protein.
Length = 295
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Frame = -3
Query: 338 IYGCCSDVLFFQTLF*---FFYDNVLLFNTLL---ILMINSIICGRRFREIRKLSNNCIF 177
++GC ++ FF + ++LF+ +L +LM+NS+ + +I K + +
Sbjct: 160 VFGCATNQCFFHYWLIQRSIIFSLIVLFSLILSIKLLMMNSVKHQQSNNQISKANRLALL 219
Query: 176 DDCKLELED-----CSSIIPSCPKLVVTN 105
D C + L D C + P+ P N
Sbjct: 220 DTCTVLLFDFLPAFCGHMWPTAPMFSFNN 248
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +3
Query: 321 RTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQMETMK 500
R S N SS NNV + HS + + D + + TP +T+ T +
Sbjct: 425 RPMSNNNSSSNNVPSVQEQHSVPKKEEVRELDYRPYEKENGVHTPNAETNSTQGNSSPIS 484
Query: 501 T 503
T
Sbjct: 485 T 485
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +3
Query: 321 RTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQMETMK 500
R S N SS NNV + HS + + D + + TP +T+ T +
Sbjct: 425 RPMSNNNSSSNNVPSVQEQHSVPKKEEVRELDYRPYEKENGVHTPNAETNSTQGNSSPIS 484
Query: 501 T 503
T
Sbjct: 485 T 485
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 306 KEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTP----KVKTSD 473
KE+ TTS S++ + + S+ TP++ S T ST + V+TS
Sbjct: 515 KEETSTTTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTST 574
Query: 474 TATQMETMKT 503
T+ T T
Sbjct: 575 PTTRRTTTTT 584
>Z66520-9|CAA91390.2| 335|Caenorhabditis elegans Hypothetical
protein F49E12.5a protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -1
Query: 577 LLGKRHLS*TIMQIPSRF*AFLTFFVFIVSICVAVSLVFTLGVCVDLVFFKDWLSLSEVG 398
+L KR S + + SR T +FI+SIC +S V G+ L+ ++S ++
Sbjct: 220 ILWKRSYS-FVNRFQSRISLKCTQAIFIISICQCISNVLYSGLLSLLMKLGRYMSSADYN 278
Query: 397 VSFSL 383
+S SL
Sbjct: 279 LSLSL 283
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 303 LKEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQT 452
+KEK +RTT + A S+N + I ++ N N +KN+K+ +T
Sbjct: 138 VKEKEIRTTELKA-SENAII---IRYNGTNTFTADTRGNVFVKNSKNCET 183
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQME 491
K+ TT ++ + ++ TPT+ ++K+T +T T T T T
Sbjct: 244 KSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPT 303
Query: 492 TMKT 503
TMK+
Sbjct: 304 TMKS 307
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 312 KNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQME 491
K+ TT ++ + ++ TPT+ ++K+T +T T T T T
Sbjct: 358 KSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPT 417
Query: 492 TMKT 503
TMK+
Sbjct: 418 TMKS 421
>U51999-2|AAA96083.2| 327|Caenorhabditis elegans Hypothetical
protein C43H6.5 protein.
Length = 327
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 300 CLKEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQ 422
C K+K+ R + + Q N F H + ++ TS N Q
Sbjct: 149 CWKQKDARVHTETSGVQQNAFMSETTHRIDQQSRTSGNGQQ 189
>AF125459-8|AAD12840.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 21 protein.
Length = 317
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -3
Query: 548 HHANSIPLLGFPHIFCFHCLHLCRSIACFYFRCLRGLGIF*RLVVIV*GWRLIFTAVWNI 369
++ ++IP + FHC+ + F+ + GL I + V + IFT + I
Sbjct: 191 NYKDAIPWANISFLHLFHCIPCVVLVTIFFIVTIYGLTILEYRIKNVERYLTIFTLIMGI 250
Query: 368 Q 366
Q
Sbjct: 251 Q 251
>AF038613-3|AAB92050.2| 102|Caenorhabditis elegans Hypothetical
protein F42A6.5 protein.
Length = 102
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 233 IICGRRFREIRKLSNNCIFDDCKL-EL-EDCSSIIPSC 126
+ GRRF +RKL+ N FD +L EL + C I SC
Sbjct: 14 LFAGRRFMILRKLTMNPYFDYKQLIELVQQCGGEILSC 51
>AC006795-2|AAF59493.3| 421|Caenorhabditis elegans Hypothetical
protein Y50D4B.6 protein.
Length = 421
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 363 ELNIPHSSENETPTSDNDNQSLKNTKSTQTP 455
E I HSS +TP+S +N+SL P
Sbjct: 43 ESGIIHSSSQKTPSSVRENESLLQANEENVP 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,213
Number of Sequences: 27780
Number of extensions: 267546
Number of successful extensions: 1038
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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