Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1181
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 153 2e-38
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 73 4e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 7e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 68 9e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 52 7e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 2e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 43 3e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 2e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 40 3e-04
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.93
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 1.6
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 2.1
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 27 2.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 153 bits (371), Expect = 2e-38
Identities = 69/75 (92%), Positives = 73/75 (97%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 328 EYDESGPSIVHRKCF 284
EYDESGP IV+RKCF
Sbjct: 361 EYDESGPGIVYRKCF 375
Score = 55.2 bits (127), Expect = 7e-09
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
G+E+ AGIHE TYNSIMK DVDIRKDLY N V+S
Sbjct: 268 GLEN-AGIHEATYNSIMKCDVDIRKDLYGNVVMS 300
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.5 bits (170), Expect = 4e-14
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 6/82 (7%)
Frame = -2
Query: 514 IVGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 344
+ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+
Sbjct: 352 VCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQL 410
Query: 343 WISKQEYDESGP---SIVHRKC 287
WIS+QEY+E G +++ ++C
Sbjct: 411 WISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.5 bits (160), Expect = 7e-13
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = -2
Query: 514 IVGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMW 341
+ GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 340 ISKQEYDESG 311
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 68.1 bits (159), Expect = 9e-13
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 328 EYDESGPSIVHRKCF 284
EY ++ +++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
Score = 32.3 bits (70), Expect = 0.057
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 594 AGIHETTYNSIMKWDVDIRKDLYANTVLS 508
+G+H + SI+ D+D+R LY+N VLS
Sbjct: 277 SGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 52.0 bits (119), Expect = 7e-08
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 12/86 (13%)
Frame = -2
Query: 532 LVRQHRIVGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 386
L R + GG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 385 GGSILAS-LSTFQQMWISKQEYDESG 311
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 591 GIHETTYNSIMKWDVDIRKDLYANTVLS 508
G+ E +++I DVDIRK LY VLS
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLS 300
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = -2
Query: 511 VGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 332
+GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 326 IGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITR 384
Query: 331 QEYDESGPSIVHRK 290
EY E G +I+ RK
Sbjct: 385 SEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -2
Query: 532 LVRQHRIVGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 353
LV I GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 352 QQMWISKQEYDESGPSIV 299
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Frame = -2
Query: 535 GLVRQHRIVGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 398
GL + + GG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 397 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 293
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 597 LAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
L + E N + +D+RK LY N VLS
Sbjct: 304 LTPLPELVDNVVQSSPIDVRKGLYKNIVLS 333
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 514 IVGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 344
IVGG +PG A +++ I + + I +I PP + ++ W G I + ++
Sbjct: 535 IVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSEL 594
Query: 343 WISKQEYDESGPSIVHRK 290
WI ++ G ++ K
Sbjct: 595 WIKNSDWKMLGSRVLQYK 612
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 333 NRSTTSLAPPLYTGSASKRTARRCLQRPRPAAQFRLVISVNLIVRKI 193
NRS +SL+ Y+ SK+T+ L + R + Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 399 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQRPRPAAQFRLVI 220
TP + PPS+PS+R R S ++ APP ++ + PRP A +
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 219 SVN 211
++N
Sbjct: 283 AIN 285
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 391 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 290
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 375 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQRPRPAA 238
S PPSL S G + STTS++P T + +Q+P P A
Sbjct: 332 SLPPSLASPEKGGIS-STTSVSPAAQASPVLSTTTQPKVQKPVPKA 376
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -3
Query: 396 PYGSVDRSS--PPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQRPRPAAQFRLV 223
P+ + D SS P +LP+ GS N + T + P + +++K + +P+P + L
Sbjct: 532 PFSATDISSVQPTNLPN---GSTNGTETFIPPVQNSITSNKEAVKPIKNKPKPISFESLS 588
Query: 222 ISVNLIV 202
NLI+
Sbjct: 589 AVGNLII 595
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 479 GDSRVHGGTTDNTVLAYKSLRMSTSHFMM 565
GDSR H TD ++L+ S+R S +++
Sbjct: 277 GDSRTHSAETDRSLLSAMSVRNSRMPYIV 305
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 466 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 356
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 509 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 330
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 329 GV 324
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 332 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 418
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,449
Number of Sequences: 5004
Number of extensions: 51803
Number of successful extensions: 160
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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