Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1181
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             122   2e-30
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  122 bits (295), Expect = 2e-30
 Identities = 57/58 (98%), Positives = 58/58 (100%)
 Frame = -2

Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 335
           GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 76  GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 61.3 bits (142), Expect = 7e-12
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = -3

Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
           GME+  GIHETTYNSIMK DVDIRKDLYANTVLS
Sbjct: 43  GMEA-CGIHETTYNSIMKCDVDIRKDLYANTVLS 75


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 11  RKVLGFGYESNVK-YQVVPSALQMWSTS 37


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 575 HITPS*SGTWTSVRTCTPTPYCRWY 501
           H+    S +   V    PTP  RWY
Sbjct: 248 HVAQDESTSLVCVAQACPTPEYRWY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 575 HITPS*SGTWTSVRTCTPTPYCRWY 501
           H+    S +   V    PTP  RWY
Sbjct: 248 HVAQDESTSLVCVAQACPTPEYRWY 272


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 355 FQQMWISKQEYDESGPSIVHRK 290
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,308
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)