Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1179
         (237 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   1.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   3.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   5.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   5.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    19   9.6  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 92  SRAGSAPPNSCSPGDPLVLERPPARGNG 9
           S A + PP+       L LERP   G G
Sbjct: 91  SYAANCPPSPKDDEKCLSLERPSGGGKG 118


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 92  SRAGSAPPNSCSPGDP 45
           S +G+ PP + SPG P
Sbjct: 109 SPSGNVPPLTPSPGPP 124


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 17 PAPAAALELVDPPGCRNSAARIPP 88
          PAP +A   +   G  + AA  PP
Sbjct: 13 PAPQSAATPISSSGMTSPAAAPPP 36


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 118 NLKQKYTTYYNHPHSVSKVSIQ 183
           N +Q+Y    NHP+S + ++ Q
Sbjct: 354 NPQQQYYYNKNHPNSENYINHQ 375


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 118 NLKQKYTTYYNHPHSVSKVSIQ 183
           N +Q+Y    NHP+S + ++ Q
Sbjct: 302 NPQQQYYYNKNHPNSENYINHQ 323


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 18.6 bits (36), Expect = 9.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 83 GSAPPNSCSPGDP 45
          G+ PP  CS   P
Sbjct: 59 GTPPPLDCSKNSP 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,250
Number of Sequences: 336
Number of extensions: 781
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3428128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)