Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1179
(237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 31 0.027
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 24 2.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 24 3.1
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 24 3.1
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 23 4.1
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 23 5.4
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 23 5.4
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 23 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 7.1
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 23 7.1
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 22 9.4
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.027
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = -1
Query: 120 VLEEAYRVLKPGGI 79
VLE+AYRVLKPGG+
Sbjct: 203 VLEQAYRVLKPGGV 216
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 117 LEEAYRVLKPGGI 79
L+EAYR+LK GG+
Sbjct: 238 LKEAYRILKVGGL 250
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 15 SPRRRPL*N*WIPRAAGIRRRGSRPALALCMPPLK 119
SPR RP+ + + IR RP+ +PPLK
Sbjct: 424 SPRLRPMDDPSCVQLPSIRSLSLRPSQVPLIPPLK 458
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 117 LEEAYRVLKPGGI 79
+E YR+LKPGG+
Sbjct: 212 IENLYRLLKPGGL 224
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 120 VLEEAYRVLKPGGI 79
V E +RVLKPGG+
Sbjct: 211 VYGEIFRVLKPGGV 224
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 17 PAPAAALELVDPPGCRNSAARIPP 88
P+ A+L L+ PPG +PP
Sbjct: 527 PSQPASLSLLGPPGNTPGHRNVPP 550
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 1 CXSPFPRAGGRSRTSGSPGLQEFGGADP 84
C FP + RS +G+P +F P
Sbjct: 201 CVDSFPTSDVRSLVAGTPATDDFSHNKP 228
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 117 LEEAYRVLKPGG 82
L+E YRVLKP G
Sbjct: 117 LKEIYRVLKPNG 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 92 SRAGSAPPNSCSPGDPLVLERPP 24
S A +APP++ +P P RPP
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPP 140
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 57 AAGIRRRGSRPALALCMPPLKPK 125
AA ++ S P+L +PP+ PK
Sbjct: 178 AAPVKSPPSAPSLPSAVPPMPPK 200
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 69 RRRGSRPALALCMPP 113
RR+ SRP A+ +PP
Sbjct: 217 RRKPSRPGTAITLPP 231
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 117 LEEAYRVLKPGG 82
++E YRVLKP G
Sbjct: 121 MKEIYRVLKPNG 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,843
Number of Sequences: 5004
Number of extensions: 12549
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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