Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1179
(237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 30 0.23
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 28 0.92
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 27 2.8
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 26 3.7
08_01_0100 - 714244-715461 26 4.9
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 26 4.9
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 26 4.9
02_04_0037 + 19104367-19104978 26 4.9
11_04_0448 - 17834712-17834809,17835570-17835622,17835721-178357... 25 6.5
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 25 6.5
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 25 6.5
10_08_0223 - 15986763-15987575 25 8.6
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 25 8.6
05_04_0042 + 17439952-17440226,17441196-17441287,17441367-174414... 25 8.6
04_04_0267 + 24048649-24049140,24049521-24049835 25 8.6
02_05_0700 + 31018480-31019832 25 8.6
02_01_0060 - 434731-435879 25 8.6
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 11 HFPAPAAALELVDPPGCRNSAARIPPGFSTLYA 109
H P PAAA VDP C +S + P S A
Sbjct: 115 HLPPPAAAASRVDPDPCSSSHGAVVPSTSAAAA 147
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 28.3 bits (60), Expect = 0.92
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 92 SRAGSAPPNSCSPGDPLVLERPPARGNGL 6
S GS+PP CS P RPPA GL
Sbjct: 25 SSRGSSPP--CSTAPPSTSHRPPAAAGGL 51
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 8 AHFPAPAAALELVDPPGCRNSAARIPPGFST 100
AH P + + PP CR+ A+ PP F T
Sbjct: 522 AHINIPQ--ISVATPPECRSPRAQAPPRFGT 550
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 50 PPGCRNSAARIPPGFSTLYAS 112
PPG ++ AR+PPGFS+ ++S
Sbjct: 931 PPGF-SAPARVPPGFSSGFSS 950
>08_01_0100 - 714244-715461
Length = 405
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 144 ICGIFLF*VLEEAYRVLKPGGI 79
+ G+ L L + YRVL+PGG+
Sbjct: 337 VAGVMLEFALFDIYRVLRPGGL 358
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 14 FPAPAAALELVDPPGCRNSAARIPPGFSTLYA 109
FPA AAL + DP AARI G +TL+A
Sbjct: 73 FPASTAALAVPDP-----DAARIGSGAATLHA 99
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 81 SRPALALCMPPLKPKTKIYH 140
+RPAL + PPL P+ ++H
Sbjct: 594 NRPALVIPPPPLPPRQPLWH 613
>02_04_0037 + 19104367-19104978
Length = 203
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 113 RRHTEC*SRAGSAPPNSCSP 54
RR EC SRA S+PP+ P
Sbjct: 184 RRAPECKSRASSSPPSPSPP 203
>11_04_0448 -
17834712-17834809,17835570-17835622,17835721-17835798,
17836020-17836295,17836400-17836543,17836636-17836750,
17836963-17837091,17837214-17837304
Length = 327
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 69 RRRGSRPALALCMPPLKPKTKIYHI 143
R G+R A +C PP++ + K H+
Sbjct: 290 RESGTRAAARICGPPVQEREKHIHV 314
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 169 YLQSGGDYNMWYIFVLGFRGGIQSAK 92
Y ++G D +WY ++ R GI+ +K
Sbjct: 352 YSRAGNDIAIWYCVIVAGRPGIELSK 377
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 113 RRHTEC*SRAGSAPPNSCSPGDPLVLERPPARGN 12
RR ++A SAPPN C ++R P++ +
Sbjct: 368 RRRASLEAQAASAPPNKCGAAMMARVQRCPSQAS 401
>10_08_0223 - 15986763-15987575
Length = 270
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 184 IELTPYLQSGGDYNMWYIFVLGFRGG 107
I + P SGGDYN Y G GG
Sbjct: 171 IAMAPSPSSGGDYNGGYADAAGGGGG 196
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 169 YLQSGGDYNMWYIFVLGFRGGIQSAKAG 86
YL GGD + ++G RGG K G
Sbjct: 131 YLARGGDLAALFAELMGRRGGCSRGKGG 158
>05_04_0042 +
17439952-17440226,17441196-17441287,17441367-17441414,
17442522-17442919,17443298-17443633
Length = 382
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 77 APPNSCSPGDPLVLERPP 24
A +SCSPG VLER P
Sbjct: 204 AQSSSCSPGKGKVLERSP 221
>04_04_0267 + 24048649-24049140,24049521-24049835
Length = 268
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 120 VLEEAYRVLKPGGIRAAEF 64
V E +RVLKPGG+ F
Sbjct: 165 VFAEIFRVLKPGGVCIVSF 183
>02_05_0700 + 31018480-31019832
Length = 450
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 83 GSAPPNSCSPGDPLVLERPPAR 18
G P PG PLV E+PP +
Sbjct: 68 GQPLPGQSLPGQPLVGEKPPGQ 89
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 83 GSAPPNSCSPGDPLVLERPPAR 18
G + P PG PLV E+PP +
Sbjct: 98 GQSLPGQPLPGQPLVGEKPPGQ 119
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 83 GSAPPNS-CSPGDPLVLERPPARGNG 9
G PP PG PLV E+PP + G
Sbjct: 113 GEKPPGQPLVPGQPLVGEKPPGQPLG 138
>02_01_0060 - 434731-435879
Length = 382
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 17 PAPAAALELVDPPGCRNSAARIPPGFSTLYASSKT*NKNIPHIII 151
PA A +++DP ++A +PP T + SS + N+ + +
Sbjct: 36 PARRQAAKVLDPDDVEDAAGGLPPPAITFHPSSLSGPGNVDFLYL 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,433,547
Number of Sequences: 37544
Number of extensions: 133532
Number of successful extensions: 465
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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