Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1179
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical...    28   1.0  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical pr...    26   4.1  
L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...    26   4.1  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    25   5.4  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    25   5.4  
AC006654-1|AAF39872.1|   87|Caenorhabditis elegans Hypothetical ...    25   7.2  

>AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical
           protein C17H12.8 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 17  PAPAAALELVDPPGCRNSAARIPPGFSTLY 106
           P P  A E V  P   N   +IPP FS  Y
Sbjct: 23  PEPIIAGEFVTIPAGANDTVQIPPNFSCTY 52


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 45  WIPRAAGI--RRRGSRPALALCMPPLKPKTKIYHIL*SPPLCK*GV 176
           WIP  + I  + + SR  +A+    +K KT ++H+  + P C+ G+
Sbjct: 412 WIPILSAIVEKLKQSRSGVAVLKNYVKWKTIMFHLAYASPKCRDGL 457


>Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 45  WIPRAAGI--RRRGSRPALALCMPPLKPKTKIYHIL*SPPLCK*GV 176
           WIP  + I  + + SR  +A+    +K KT ++H+  + P C+ G+
Sbjct: 376 WIPILSAIVEKLKQSRSGVAVLKNYVKWKTIMFHLAYASPKCRDGL 421


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 45  WIPRAAGI--RRRGSRPALALCMPPLKPKTKIYHIL*SPPLCK*GV 176
           WIP  + I  + + SR  +A+    +K KT ++H+  + P C+ G+
Sbjct: 412 WIPILSAIVEKLKQSRSGVAVLKNYVKWKTIMFHLAYASPKCRDGL 457


>Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 45  WIPRAAGI--RRRGSRPALALCMPPLKPKTKIYHIL*SPPLCK*GV 176
           WIP  + I  + + SR  +A+    +K KT ++H+  + P C+ G+
Sbjct: 376 WIPILSAIVEKLKQSRSGVAVLKNYVKWKTIMFHLAYASPKCRDGL 421


>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 120 VLEEAYRVLKPGG 82
           V+ EA+RVLKPGG
Sbjct: 185 VVREAFRVLKPGG 197


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 28  GRSRTSGSPGLQEFGGA 78
           G+S   G PGLQ +GGA
Sbjct: 288 GQSGPQGEPGLQGYGGA 304


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 28  GRSRTSGSPGLQEFGGA 78
           G+S   G PGLQ +GGA
Sbjct: 288 GQSGPQGEPGLQGYGGA 304


>AC006654-1|AAF39872.1|   87|Caenorhabditis elegans Hypothetical
           protein H09I01.1 protein.
          Length = 87

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  PPGFSTLYASSKT*NKNIP 139
           P GFST++ SS T N +IP
Sbjct: 64  PLGFSTIFRSSGTVNLDIP 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,719,909
Number of Sequences: 27780
Number of extensions: 84341
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)