Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1179
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   6.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   6.2  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 130 FVLGFRGGIQSAKAGRDPRR 71
           F++GF   I  A  G D +R
Sbjct: 15  FIIGFFNAISGAIKGNDYQR 34


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 7   SPFPRAGGRSRTSGSPGLQEFGGADP 84
           +P P     S  SG P L    G+ P
Sbjct: 415 APMPPIPNMSNMSGMPPLPNMPGSMP 440


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 38  ELVDPPGCRNSAAR 79
           E VDP GC    A+
Sbjct: 400 ETVDPAGCNAGPAK 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,833
Number of Sequences: 438
Number of extensions: 1034
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)