Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1178
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   6.9  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   9.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   9.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -3

Query: 305  DKESH*SNRRRYPSLGEQKAELEEDHHHLENPIWGWGDKDMSDDDKKLAEIV--HKKND 135
            D   H S RR         A    DHHHL       GD+  ++ D +    V  +K++D
Sbjct: 1156 DPSGHISRRR------SMSASSRGDHHHLGAVTEEGGDESANETDSETVSTVPQNKRDD 1208


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -3

Query: 305  DKESH*SNRRRYPSLGEQKAELEEDHHHLENPIWGWGDKDMSDDDKKLAEIV--HKKND 135
            D   H S RR         A    DHHHL       GD+  ++ D +    V  +K++D
Sbjct: 1156 DPSGHISRRR------SMSASSRGDHHHLGAVTEEGGDESANETDSETVSTVPQNKRDD 1208


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -3

Query: 305  DKESH*SNRRRYPSLGEQKAELEEDHHHLENPIWGWGDKDMSDDDKKLAEIV--HKKND 135
            D   H S RR         A    DHHHL       GD+  ++ D +    V  +K++D
Sbjct: 1156 DPSGHISRRR------SMSASSRGDHHHLGAVTEEGGDESANETDSETVSTVPQNKRDD 1208


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -3

Query: 305  DKESH*SNRRRYPSLGEQKAELEEDHHHLENPIWGWGDKDMSDDDKKLAEIV--HKKND 135
            D   H S RR         A    DHHHL       GD+  ++ D +    V  +K++D
Sbjct: 1156 DPSGHISRRR------SMSASSRGDHHHLGAVTEEGGDESANETDSETVSTVPQNKRDD 1208


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 194 DKDMSDDDKK 165
           D DM+DDD+K
Sbjct: 198 DDDMNDDDRK 207


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 471 SPQFCYQLLLCIDIW 515
           S   C+ +LL ++IW
Sbjct: 166 SATVCFMMLLMLEIW 180


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 471 SPQFCYQLLLCIDIW 515
           S   C+ +LL ++IW
Sbjct: 162 SATVCFMMLLMLEIW 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,025
Number of Sequences: 336
Number of extensions: 2813
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)