Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1178
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    38   7e-04
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    26   3.1  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   3.1  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    26   3.1  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   4.1  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   7.2  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   7.2  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   9.5  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = -3

Query: 536 AHLWGYKPYVNT*EQLITKLWRCCALGEGWHNYHHVFPWDNKCG 405
           AHL G +P+ +T       +     LGEG HNYHH FP D + G
Sbjct: 254 AHLIGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNG 297



 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 391 YSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRI 290
           Y  + +   I IA+ FGLAY+L T  +  I+  I
Sbjct: 301 YEYDPTKIFIYIASLFGLAYNLNTFPDNEIQKGI 334


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 ELLISSHSFCEQFPPISYHRLTCLYRPS 202
           EL IS H F  +   ++Y R  C Y PS
Sbjct: 41  ELNISGHFFRNKLKYLAYLRKACRYNPS 68


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 ELLISSHSFCEQFPPISYHRLTCLYRPS 202
           EL IS H F  +   ++Y R  C Y PS
Sbjct: 41  ELNISGHFFRNKLKYLAYLRKACRYNPS 68


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 ELLISSHSFCEQFPPISYHRLTCLYRPS 202
           EL IS H F  +   ++Y R  C Y PS
Sbjct: 41  ELNISGHFFRNKLKYLAYLRKACRYNPS 68


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 456 RGLAQLSSRISLGQQMRPSSETTAPIYHPP*LTSLQNSA 340
           R    L++ ++     +P S  T P+YH P  +SL NS+
Sbjct: 308 RRSVSLATGLNSPSVSKPPSSATGPLYHSP-QSSLTNSS 345


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 92  HKMCTSET--LELLISSHSFCEQFPPISYHRLTCLYRP 199
           H +   ET  LEL +S  ++ +Q+  I + RLT L RP
Sbjct: 6   HSIPCEETKRLELSLSQQTYSQQYASIYFARLTAL-RP 42


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 325 KTVSEKMIRNRINRTGDGTHPWANRRQSWRKIIII*KTLYGAGAIKT 185
           +T++E+     IN      +  A++ Q+W KI+I  + ++  G  KT
Sbjct: 129 ETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKT 175


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 462 FRRGLAQLSSRISLGQQMRPSSETTAPIYHPP 367
           FR  L    S ISL     P      PIY PP
Sbjct: 206 FRENLCPCESCISLRNLEMPMLVAEEPIYEPP 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,504
Number of Sequences: 5004
Number of extensions: 45387
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)