Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1178
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409     29   1.8  
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503...    28   4.1  
08_01_0265 + 2148255-2150219,2150735-2150812                           27   7.2  
06_01_0495 - 3546131-3547588                                           27   7.2  
08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728...    27   9.5  

>03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409
          Length = 99

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 198 PAPYRV-F*MMMIFLQLCLLFAQGWVPSPVR 287
           P PY + F M   F+ L + FA GW+  PVR
Sbjct: 69  PLPYIIIFGMSTPFVILAIAFANGWIKVPVR 99


>01_05_0342 -
           21147940-21148213,21149626-21149697,21150273-21150397,
           21150625-21150684,21150824-21150902,21151041-21151126,
           21151224-21151544
          Length = 338

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 254 QKAELEEDHHHLEN-PIWGWGDKDMSDDDKKLAEIV 150
           ++  +EE+    E  P WG GD+D  D D ++ +I+
Sbjct: 59  ERGAIEEEEEEEEGFPEWGNGDEDEYDHDPEIGDIM 94


>08_01_0265 + 2148255-2150219,2150735-2150812
          Length = 680

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 370 ALIDIAAKFGLAYDLKTVSEKM-IRNRIN 287
           AL+D+  K+GL  D + V E+M IRN I+
Sbjct: 358 ALVDLYCKWGLMEDARNVFERMPIRNLIS 386


>06_01_0495 - 3546131-3547588
          Length = 485

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 525 GVQAICQYIGATDNKTVAMLCFRRGLAQLSSRISLG-QQMRPSSETTAPIYHPP*LTSLQ 349
           GVQA+  Y   +  KT  + CF R   +  +  S+G + +   S    P+  PP L   +
Sbjct: 242 GVQAVSFYADQSTGKTKVVHCFIRHCDKTYTDYSVGCEVLSLGSPAWRPVADPPYLIKTK 301

Query: 348 NS 343
            S
Sbjct: 302 TS 303


>08_02_0028 -
           11371547-11371657,11372326-11372518,11372738-11372814,
           11373498-11373608,11374533-11374659,11374745-11375022
          Length = 298

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 444 QLSSRISLGQQMRPSSETTAP 382
           QLSSR+  G+++R SSE +AP
Sbjct: 27  QLSSRVRNGKRVRGSSERSAP 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,176
Number of Sequences: 37544
Number of extensions: 304919
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)