Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1178
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95123-2|CAB08356.1| 339|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AF260244-1|AAF97550.1| 339|Caenorhabditis elegans stearoyl-CoA ... 42 3e-04
AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA ... 42 4e-04
AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid de... 42 4e-04
Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA... 40 0.001
AL132877-18|CAC70116.1| 362|Caenorhabditis elegans Hypothetical... 28 3.7
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 3.7
AL032643-7|CAA21659.2| 362|Caenorhabditis elegans Hypothetical ... 28 3.7
AF038615-4|AAB94143.1| 743|Caenorhabditis elegans Hypothetical ... 28 3.7
AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical... 28 3.7
Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z95123-2|CAB08356.1| 339|Caenorhabditis elegans Hypothetical
protein VZK822L.1 protein.
Length = 339
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 536 AHLWGYKPYVNT*EQLITKLWRCCALGEGWHNYHHVFPWD 417
AH +G+KPY ++ + A+GEG HN+HH FP D
Sbjct: 245 AHYFGWKPYDSSITPVENVFTTIAAVGEGGHNFHHTFPQD 284
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 382 NLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
N + LID AA GL YD KT +++I +++ G
Sbjct: 295 NWTRVLIDTAAALGLVYDRKTACDEIIGRQVSNHG 329
>AF260244-1|AAF97550.1| 339|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-6 protein.
Length = 339
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 536 AHLWGYKPYVNT*EQLITKLWRCCALGEGWHNYHHVFPWD 417
AH +G+KPY ++ + A+GEG HN+HH FP D
Sbjct: 245 AHYFGWKPYDSSITPVENVFTTIAAVGEGGHNFHHTFPQD 284
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 382 NLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
N + LID AA GL YD KT +++I +++ G
Sbjct: 295 NWTRVLIDTAAALGLVYDRKTACDEIIGRQVSNHG 329
>AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-7 protein.
Length = 338
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -3
Query: 536 AHLWGYKPYVNT*EQLITKLWRCCALGEGWHNYHHVFPWD 417
AH +G+KPY + + A+GEG HN+HH FP D
Sbjct: 244 AHYFGWKPYDTSVSAVENVFTTVVAVGEGGHNFHHTFPQD 283
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 427 FPGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
FP A+E N + LID AA GL YD KT++++ I ++ G
Sbjct: 280 FPQDYRASEYS-LIYNWTRVLIDTAAVLGLVYDRKTIADEFISRQVANHG 328
>AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid
desaturase protein 7 protein.
Length = 338
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -3
Query: 536 AHLWGYKPYVNT*EQLITKLWRCCALGEGWHNYHHVFPWD 417
AH +G+KPY + + A+GEG HN+HH FP D
Sbjct: 244 AHYFGWKPYDTSVSAVENVFTTVVAVGEGGHNFHHTFPQD 283
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 427 FPGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
FP A+E N + LID AA GL YD KT++++ I ++ G
Sbjct: 280 FPQDYRASEYS-LIYNWTRVLIDTAAVLGLVYDRKTIADEFISRQVANHG 328
>Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.3 protein.
Length = 333
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 536 AHLWGYKPYVNT*EQLITKLWRC-CALGEGWHNYHHVFPWD 417
+H G++PY + + LW A+GEG HNYHH FP D
Sbjct: 236 SHWVGWQPYDHQ-ASSVDNLWTSIAAVGEGGHNYHHTFPQD 275
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 427 FPGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
FP +E ++ N + LID A G+ YD KT E++I+ + + G
Sbjct: 272 FPQDYRTSEHAEF-LNWTRVLIDFGASIGMVYDRKTTPEEVIQRQCKKFG 320
>AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA
fatty acid desaturaseFAT-5 protein.
Length = 333
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 536 AHLWGYKPYVNT*EQLITKLWRC-CALGEGWHNYHHVFPWD 417
+H G++PY + + LW A+GEG HNYHH FP D
Sbjct: 236 SHWVGWQPYDHQ-ASSVDNLWTSIAAVGEGGHNYHHTFPQD 275
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 427 FPGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
FP +E ++ N + LID A G+ YD KT E++I+ + + G
Sbjct: 272 FPQDYRTSEHAEF-LNWTRVLIDFGASIGMVYDRKTTPEEVIQRQCKKFG 320
>AL132877-18|CAC70116.1| 362|Caenorhabditis elegans Hypothetical
protein Y54E5A.1 protein.
Length = 362
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 479 LWRCCALGEGWHNYHHVFPW 420
LW C G+H HH FP+
Sbjct: 248 LWNLCTFNVGYHVEHHDFPY 267
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -3
Query: 269 PSLGEQKAELEEDHHHLEN----PIWGWGDKDMSDDDKKLAEIVHKKND 135
PS+ +AE ED HL++ P G++ +SDD+++ E+ + D
Sbjct: 235 PSISATEAEASEDPEHLDDVITEPAPPIGEQTLSDDEEEEEEVPEDEAD 283
>AL032643-7|CAA21659.2| 362|Caenorhabditis elegans Hypothetical
protein Y54E5A.1 protein.
Length = 362
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 479 LWRCCALGEGWHNYHHVFPW 420
LW C G+H HH FP+
Sbjct: 248 LWNLCTFNVGYHVEHHDFPY 267
>AF038615-4|AAB94143.1| 743|Caenorhabditis elegans Hypothetical
protein R02D3.2 protein.
Length = 743
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 263 LGEQKAELEEDHHHLENPIWGWGDKDMSDDDKKLAEIVHKK 141
+ E EL +D E WGWGD D + + E+ K
Sbjct: 696 ISEYLTELTQDDPIEEEEGWGWGDDDGEEQEISSKEVESPK 736
>AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical
protein Y48G1C.8 protein.
Length = 828
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 319 VSEKMIRNRINRTGDGTHPW 260
V + N+IN TGDG PW
Sbjct: 444 VPANFVANQINHTGDGLSPW 463
>Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical
protein F01D4.7 protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 186 VFIAPAPYRVF*MMMIFLQLCLLFAQ 263
V +APA + +F + +IF LC+ F+Q
Sbjct: 98 VILAPALFALFNLPLIFSMLCMEFSQ 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,598,036
Number of Sequences: 27780
Number of extensions: 265627
Number of successful extensions: 647
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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