Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1177
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.8  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.8  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   3.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   8.7  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 384 PVVPTRADSQEVLPPDMN 437
           PVVPTR++S  +L P  N
Sbjct: 468 PVVPTRSNSSSILQPSYN 485


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 335 PPFKPKRVTASRLK*AAGGTYPRGLTRGPTTRYECVPTVFQLIQ 466
           P FK KRV +S++  +AG      L R    R+E  P  +QL Q
Sbjct: 444 PKFK-KRVDSSKMNLSAGSKTKSKLQRRRRRRHEARPLHYQLNQ 486


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 582 GFGGSGNATHGVCGFA 535
           GFGG+ NAT G+ G A
Sbjct: 243 GFGGANNATAGIAGAA 258


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 322 YNGCPTLQTETRYCFTA 372
           Y  CP L +  R+CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,608
Number of Sequences: 5004
Number of extensions: 47368
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)