Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1177
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636...    30   1.7  

>02_05_0587 +
           30162806-30163183,30163315-30163478,30163571-30163654,
           30163737-30163794,30164092-30164145,30164244-30164309,
           30164310-30164381,30164547-30164627,30165361-30165533,
           30165916-30166018,30166148-30166279,30166432-30166554,
           30166898-30167002,30167397-30167722,30167919-30168258,
           30169973-30170113,30170589-30170801,30170901-30171119,
           30171272-30171619,30171711-30172043,30172548-30172601
          Length = 1188

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 516 SSKWSAYVVILPEQKHHCIS*NTVGTHSYLVVGPL 412
           SS+WS+Y+  LP Q +  +        +YLV  P+
Sbjct: 161 SSRWSSYIAALPRQPYSLLYWTRPELDAYLVASPI 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,519
Number of Sequences: 37544
Number of extensions: 355098
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)