Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1176
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    29   2.7  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    27   8.3  

>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 259 KNRLKLI*LKIAMST-FR*ASNYRHNCL*IIFDKKYVSFSYQIGEG 125
           +  + LI L I +S  F   S Y + C   ++D  Y+S+SY + EG
Sbjct: 125 RTTILLIVLSIPVSLGFMFKSQYWNLCCTFVYDHNYLSYSYNVIEG 170


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 613 PFKLHMT*ILNAHSDTFNDQVACSCYVVSCSTTRTRTLYFLSRTYHMAKSF 461
           P  +    +LN HSD     V+C  + V  S +R  T+      +H+++ F
Sbjct: 572 PLSMKKLSVLNGHSDAITCLVSCQSHAVLVSASRDLTVL----VWHLSEMF 618


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 613 PFKLHMT*ILNAHSDTFNDQVACSCYVVSCSTTRTRTLYFLSRTYHMAKSF 461
           P  +    +LN HSD     V+C  + V  S +R  T+      +H+++ F
Sbjct: 572 PLSMKKLSVLNGHSDAITCLVSCQSHAVLVSASRDLTVL----VWHLSEMF 618


>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 216 LLDRQVIIGIIAYKLYLIKNTSHLVI---RLVKVDLPPALRLSFCSTK 82
           L+D    IG++   +Y I N SH +I   R   V LP      FC +K
Sbjct: 72  LVDNSHFIGVVGEFIYEISNLSHFLISLNRFCAVYLPYYYAPIFCVSK 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,792,649
Number of Sequences: 27780
Number of extensions: 232984
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)