BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1176 (628 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC024799-1|AAK72316.1| 349|Caenorhabditis elegans Serpentine re... 29 2.7 Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical pr... 27 8.3 AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical ... 27 8.3 AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine re... 27 8.3 >AC024799-1|AAK72316.1| 349|Caenorhabditis elegans Serpentine receptor, class x protein4 protein. Length = 349 Score = 29.1 bits (62), Expect = 2.7 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 259 KNRLKLI*LKIAMST-FR*ASNYRHNCL*IIFDKKYVSFSYQIGEG 125 + + LI L I +S F S Y + C ++D Y+S+SY + EG Sbjct: 125 RTTILLIVLSIPVSLGFMFKSQYWNLCCTFVYDHNYLSYSYNVIEG 170 >Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical protein VT23B5.2 protein. Length = 931 Score = 27.5 bits (58), Expect = 8.3 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -1 Query: 613 PFKLHMT*ILNAHSDTFNDQVACSCYVVSCSTTRTRTLYFLSRTYHMAKSF 461 P + +LN HSD V+C + V S +R T+ +H+++ F Sbjct: 572 PLSMKKLSVLNGHSDAITCLVSCQSHAVLVSASRDLTVL----VWHLSEMF 618 >AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical protein VT23B5.2 protein. Length = 931 Score = 27.5 bits (58), Expect = 8.3 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -1 Query: 613 PFKLHMT*ILNAHSDTFNDQVACSCYVVSCSTTRTRTLYFLSRTYHMAKSF 461 P + +LN HSD V+C + V S +R T+ +H+++ F Sbjct: 572 PLSMKKLSVLNGHSDAITCLVSCQSHAVLVSASRDLTVL----VWHLSEMF 618 >AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine receptor, class x protein26 protein. Length = 331 Score = 27.5 bits (58), Expect = 8.3 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = -2 Query: 216 LLDRQVIIGIIAYKLYLIKNTSHLVI---RLVKVDLPPALRLSFCSTK 82 L+D IG++ +Y I N SH +I R V LP FC +K Sbjct: 72 LVDNSHFIGVVGEFIYEISNLSHFLISLNRFCAVYLPYYYAPIFCVSK 119 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,792,649 Number of Sequences: 27780 Number of extensions: 232984 Number of successful extensions: 367 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 367 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1374536540 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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