Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1175
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    27   2.8  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    27   2.8  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.7  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    26   5.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   6.5  

>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 438 EHAKSLDESKKNFIKYIDHNK 500
           EH +SLD  KKN +K ++  K
Sbjct: 305 EHVQSLDFDKKNMVKNLEQGK 325


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 375 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKSRPI 512
           +PK  T +  +  EK   EEEE  + L+   +   + +DH    P+
Sbjct: 1   MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELPL 46


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 402 PDLFEKSINEEEEHAKSLDESKKNFIK 482
           PDL E+S  +EE  + S  E K NF++
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQ 167


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 136 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLE 255
           V+ PN    L R    Q P    F   + + K+D+++YL+
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQ 48


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 366 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFIKY 485
           F+T+ +T+   YPD+ +K      + ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,102
Number of Sequences: 5004
Number of extensions: 42455
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)