Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1175
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U13645-2|AAM15543.1|  367|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    27   7.9  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    27   7.9  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    27   7.9  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    27   7.9  

>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
 Frame = +3

Query: 255 KIYEVPVVDVRTKINMGKF----KKD-VVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEK 419
           KIY++PV DVRT++ MG      K D   K  + K++D K+A+V + K   F YP +FE 
Sbjct: 62  KIYDLPVRDVRTEVQMGDITWNSKLDHQYKKAMWKDEDKKIAYVFMSKGFEFSYPQMFE- 120

Query: 420 SINEEEEHAKSLDESKK 470
           ++ E+ E  K++ + ++
Sbjct: 121 ALEEDLELVKAMKQQEE 137



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 133 RVFLPNFWMKLVRPHP---KQLP-NIVHFHCSMEMTKYDIKNYLEKFMKYPL 276
           RVFLP+FWM +V        +LP N V F     M+++DI+ YL K    P+
Sbjct: 17  RVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYLTKIYDLPV 68


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 288 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL 455
           TKIN+GK K  V   +  K++  K AF    ++  F+  + FEK +     + +S+
Sbjct: 33  TKINLGKVKTTVEAPFKNKKNRKKSAFPNKQRSRFFQTFNRFEKLLRGNYNYLRSI 88


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 41  NIVYYPLLNTSNFNNVHTVV 100
           N  +YPLLNTS+F+ +H+ V
Sbjct: 696 NAQHYPLLNTSSFDPIHSTV 715


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 41  NIVYYPLLNTSNFNNVHTVV 100
           N  +YPLLNTS+F+ +H+ V
Sbjct: 696 NAQHYPLLNTSSFDPIHSTV 715


>AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.44 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 312 KKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL-DESKKNFIKYI 488
           +K V+     KE  V      LP+    K  D++EK+INE+ +  K   D+ KK  +  +
Sbjct: 100 EKSVILRKSRKECKVPSVVQALPEKYQKKISDIWEKNINEKVKKEKDCWDQQKKTRLLLL 159

Query: 489 DHNKSRPIYPAGF 527
           +       +P  F
Sbjct: 160 NLPMGVKFHPPAF 172


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 199 VHFHCSMEMTKYDIKNYLEKFMK 267
           +HFHC  + TKYD     +K  K
Sbjct: 63  IHFHCLTQNTKYDFFQIFDKSRK 85


>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 306 KFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 470
           K ++  ++G    +  V +  VT+PK + F+   L ++  + E  H    DE+++
Sbjct: 47  KNRRQRMEGLENVDQTVDLQLVTVPKVVPFRASRLLQEIYDRERVHGMRRDEARQ 101


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 327 KGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFI----KYIDH 494
           K  + KED    +  T  KT       + E+++ EE+E  K  DE+ K  +    + I+H
Sbjct: 85  KTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKNKKRDEASKKTLNSKNEEIEH 144

Query: 495 NKSRPI 512
            K R I
Sbjct: 145 LKKRVI 150


>Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical
           protein T07F10.1b protein.
          Length = 976

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  YPLLNTSNFNNVHTVV 100
           YPLLN S  NN H +V
Sbjct: 546 YPLLNASRINNTHIIV 561


>Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical
           protein T07F10.1a protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  YPLLNTSNFNNVHTVV 100
           YPLLN S  NN H +V
Sbjct: 558 YPLLNASRINNTHIIV 573


>U13645-2|AAM15543.1|  367|Caenorhabditis elegans Hypothetical
           protein C05D10.2c protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 402 PDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKSRPI 512
           PD  + SI++  +    + + KK   K I H K RP+
Sbjct: 327 PDHIQLSIDDYRDRLYEMIDEKKASFKRIQHEKIRPV 363


>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
           beta protein.
          Length = 1418

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 DVRTKINMGKFKKDVVKGYVIKED 350
           DV  ++NMGKF+ +   GY++K D
Sbjct: 847 DVYMQLNMGKFEYNGGSGYLLKPD 870


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
           beta homolog EGL-8 protein.
          Length = 1431

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 DVRTKINMGKFKKDVVKGYVIKED 350
           DV  ++NMGKF+ +   GY++K D
Sbjct: 848 DVYMQLNMGKFEYNGGSGYLLKPD 871


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
           defective protein 8,isoform a protein.
          Length = 1419

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 DVRTKINMGKFKKDVVKGYVIKED 350
           DV  ++NMGKF+ +   GY++K D
Sbjct: 848 DVYMQLNMGKFEYNGGSGYLLKPD 871


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
           defective protein 8,isoform b protein.
          Length = 1431

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 DVRTKINMGKFKKDVVKGYVIKED 350
           DV  ++NMGKF+ +   GY++K D
Sbjct: 848 DVYMQLNMGKFEYNGGSGYLLKPD 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,846
Number of Sequences: 27780
Number of extensions: 236332
Number of successful extensions: 658
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)