Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1174
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 30 0.32
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 2.3
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 27 3.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.0
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 3.0
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 26 5.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 6.9
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 25 6.9
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 9.1
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 9.1
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 29.9 bits (64), Expect = 0.32
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 500 ISVQVKYIERVRAHICN-VVGIHKCQRLIPK 411
+S Q Y+ +RA + N +VG+H C L+P+
Sbjct: 164 MSAQPYYVTEMRASVINWIVGVHTCINLLPE 194
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 426 LALMDTDNVTNVCPYTLNV 482
L L TD+V NVCP LNV
Sbjct: 477 LQLKFTDDVRNVCPLNLNV 495
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 530 LVVTRIYDDLISVQVKYIERVRAHICNV--VGIHKCQRLI 417
L++ R+Y +++K++ R+ H+C V + C R++
Sbjct: 328 LILQRLYSTNNELRIKFLGRLLGHVCGVQISKLFSCGRIV 367
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 111 NVVDWNYPDQFSKQQALRT-GALIPENALPVGIERW-RNKLFV 233
+++ WN P QF +Q L L P L + +ER R K+FV
Sbjct: 74 DLIQWNDPSQFDNEQFLNALAVLFPR--LSIEVERHVRLKIFV 114
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +2
Query: 17 LSK*NGSEVFSFLWASLTSISNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTA 196
LSK NG +V A TSIS D A N+ V R R++ L ++ + D E TA
Sbjct: 44 LSKINGVDVSLIYPALETSISKDSADLNLPVPRLRVKGKPQELAQKWAEAFPKDLVEVTA 103
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 172 APVL--RACCFENWSG*FQSTTFHENISWS 89
APVL + C + N++G Q+ N+SWS
Sbjct: 19 APVLSYKKCSYRNFNGLLQARFQSNNLSWS 48
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 218 EQIVRQRS*VA--LSIPATLNYIPLDAPYEPSPKLTPYP 328
E++V R V +SIP +Y+P+ P P YP
Sbjct: 158 EEVVELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYP 196
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 32 GSEVFSFLWASLTSISNDKAPRNIL 106
G +V SFL SLT + D R IL
Sbjct: 255 GGQVISFLTESLTKYAGDPVARKIL 279
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 442 VSISANV*YPKTITLVCFDPVYSSQ 368
+S+S+ + YP++ TL P+Y S+
Sbjct: 288 LSLSSQILYPESTTLSEISPIYDSE 312
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 296 YEPSPKLTPYPSFEGN 343
Y+P+PKLTP+ SF N
Sbjct: 221 YKPNPKLTPF-SFNNN 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,003
Number of Sequences: 5004
Number of extensions: 57030
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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