Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1174
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    35   0.042
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    32   0.39 
AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 137 PVLEAAGSQDWCSDTRERTARWYRKVEEQIVRQRS*VALSIPATLNYIPLDAPYEPSPKL 316
           P L A  S    +   ER AR        ++ QR  +  S   T +  PLD P++PS KL
Sbjct: 90  PSLMAHSSVPLSNSKSERRAR--SSSPGHVIAQRKTMVSSSSGTFSPPPLDPPFDPSSKL 147

Query: 317 TPYPSFEG 340
           +  P  +G
Sbjct: 148 SALPDIDG 155


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = +2

Query: 86  KAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTARWYRKVEEQIVRQRS*VALSIPA 265
           +AP +  VE+  + +P P   AA + D  S     T   YR        ++       PA
Sbjct: 371 EAPADAPVEQAPVAVPAPAPTAAPAPDCGSAAPAATDSGYRSKRNAYGDEQ---VTPAPA 427

Query: 266 TLNYIPLDAPYEPSPKLTPYPS 331
                P DAP E +P   P P+
Sbjct: 428 AAAEAPADAPVEQAPVAVPAPA 449


>AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical
           protein Y42G9A.2 protein.
          Length = 121

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 305 SPKLTPYPSFEGNELGNCQTGLTTVYRVKADQC-DRLWVLDVGTYGYRQ 448
           +PKL+ +     N+L NC T + TV   K   C D + V     Y  R+
Sbjct: 25  APKLSKHTKKTVNKLVNCLTPVDTVLAAKTADCEDSICVSSAKQYAQRR 73


>Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical
           protein R06A4.8 protein.
          Length = 1467

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 509 RKYVLRPEDIVSTTFIANIALDIGTSCEDTFAY 607
           +K ++ PE+ ++T +  ++  D+G   E+ FAY
Sbjct: 406 KKGLVSPENPLTTDYFLHLEADLGWKSEEKFAY 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,786
Number of Sequences: 27780
Number of extensions: 324174
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)