Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1172
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   178   6e-46
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   173   2e-44
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    85   1e-17
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   3.7  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   4.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.9  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  178 bits (433), Expect = 6e-46
 Identities = 92/154 (59%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
           V EITN CFEP NQMVKCDPR   YMA C+LYRGDV+P++V AA+ TIK KRTIQFVD  
Sbjct: 288 VQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWC 347

Query: 393 SNRFQ-GRYQLPATH-RGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
              F+ G    P  H  G+       + C            S      +FDLMY+KRAFV
Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLD--HKFDLMYSKRAFV 405

Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 118
           HWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  173 bits (421), Expect = 2e-44
 Identities = 90/154 (58%), Positives = 105/154 (68%), Gaps = 2/154 (1%)
 Frame = -2

Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
           V EITN CFEP NQMVKCDPR   YMA C+LYRGDV+P++V AA+ +IK++RTIQFVD  
Sbjct: 292 VQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWC 351

Query: 393 SNRFQ-G-RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
              F+ G  Y+ P    G+       + C            S      +FDLMY+KRAFV
Sbjct: 352 PTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLD--HKFDLMYSKRAFV 409

Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 118
           HWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 410 HWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = -3

Query: 398 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 255
           WCPTGFK+GI Y+PP  VPG  +AKV RAVCMLSNTT+IAEAW+RLDH
Sbjct: 350 WCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
 Frame = -2

Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
           V E+T   F+  N MV  DPR   Y+    L+RG V  K V+  I +++TK +  FV+ +
Sbjct: 286 VPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWI 345

Query: 393 SNRFQGRYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFVHW 214
            +       L A      + L   +T            R LG    QF  M+ ++AF+HW
Sbjct: 346 PDNV-----LKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGD---QFSAMFRRKAFLHW 397

Query: 213 YVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 121
           Y GEGM+E EF+EA     DL +  + Y+E G+D
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 34/140 (24%), Positives = 51/140 (36%)
 Frame = -3

Query: 569 PRSQTHASSPPTRW*NATPVRQVTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTWCP 390
           P + T  +S      ++TPV         CT  TS     T  + P+  S  S   +W  
Sbjct: 562 PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNS 621

Query: 389 TGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHSSTSCTPSVLSCTGT 210
           T    G +    T      L    R     +++T+I+ + +    SSTS   S  S   +
Sbjct: 622 TTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFA-SESSSFYS 680

Query: 209 SVRVWRRESSPKPVRTWLPS 150
           +V       S  P  T  PS
Sbjct: 681 NVTTSSSTVSTPPPTTSFPS 700


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 425 PSVLSNSSTWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHSST 246
           PSV+S    W PTG  +  NY P   V    L    R     S++  + + W  +   ST
Sbjct: 79  PSVISRYVVWSPTG--LADNYDPLLTV----LTNRHRVYFFSSSSRVLHQKWTCVAQMST 132


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 459 WVRRHHGTAYSKPCNLPDGG 518
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 436 SDGRVHILGYDVTTVQHTASHVTCLTGVAFHHLVGGLEACVCDLGDGK 579
           S G   +LGY ++     A++V   + V   HL+ G      D  + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,053
Number of Sequences: 5004
Number of extensions: 54149
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)