Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1172
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   2.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.3  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +3

Query: 78  WLSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRTV 257
           ++S  R PHPRL+R        P   +P      R   PP+P  R  A   A     R V
Sbjct: 104 YISQPRPPHPRLRRE-AEPEAEPGNNRPVYIPQPR---PPHPRLRREAELEAEPGNNRPV 159

Query: 258 VKASP 272
             + P
Sbjct: 160 YISQP 164



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 78  WLSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARKHA 233
           ++S  R PHPRL+R        P   +P      R   PP+P  R  A   A
Sbjct: 160 YISQPRPPHPRLRRE-AEPEAEPGNNRPVYIPQPR---PPHPRLRREAEPEA 207


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 93  RLPHPRLQRSP 125
           R PHPRL+R P
Sbjct: 110 RPPHPRLRREP 120



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 93  RLPHPRLQRSP 125
           R PHPRL+R P
Sbjct: 136 RPPHPRLRREP 146


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 390 NRFQGRYQLPA 358
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 431 SKPSVLSNSSTWCPTGFKVGINYQPPTVVPGGDLAKVQR 315
           S PS++SN         ++ I++  P    GGD   V+R
Sbjct: 417 SVPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVER 455


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 189 PPPYPHRRTSARKHAWRT 242
           P P+P R T A+ H + T
Sbjct: 417 PKPFPRRATLAQLHNFTT 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,584
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)