Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1171
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    47   2e-06
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    28   0.91 
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.8  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    26   4.8  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    26   4.8  
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    25   8.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
           DEMEF EAESN+NDLVSEYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQ 426


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 440 ARPAPTPPGLLG--RTRCPSSAVASGTVGTQT 529
           A PAP PP  +   +   PSS VA  T  TQT
Sbjct: 86  ASPAPNPPASVPEKKVEAPSSTVAESTSTTQT 117


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 90  VRSISSDSLVSLY*KQTFN 146
           VR++SSDS VSLY +Q F+
Sbjct: 42  VRTVSSDSSVSLYDRQLFD 60


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
 Frame = +2

Query: 242 KFRDVVGPPGTLGLVLARDLASNYTREG*I*QHPRDS---PYYAASMRFRFESELQRS** 412
           K   V  P   L  +     +  Y  EG     PR+S   P  + S      S LQ +  
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPLLSVSA-LSSSSHLQPTSA 244

Query: 413 GSEVRSSHGARPAPTPPGLLGRTRCPSSAVASGTVGTQT 529
            S     + +RPAPTPP     +   S  ++S TV T T
Sbjct: 245 TSSSSRLYPSRPAPTPPA----SSSSSPLLSSQTVKTTT 279


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 595 VHRRGHGTRWSSTKQRATSTIWCLSTNSTGGHRGRR 488
           V R G G R+ S+  R         ++  GG RGRR
Sbjct: 125 VQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGRR 160


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 300 KSRANTRPSVPGGPTTSRNFQCDLALRPVIRLTSLKVQSNGKKSLLN 160
           K   N   + PG P+TS + Q D + RP    T    +++   +L++
Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTTLVS 209


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 268 GDTRPGVSTRLSL*LHTRRIDMTTPPR*PLLCSV 369
           GD +PG   RL      R  D  TPP  PLL ++
Sbjct: 76  GDLKPGTEERLKELKKPRSFDNDTPPL-PLLIAL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,374
Number of Sequences: 5004
Number of extensions: 33699
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)