Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1171
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0034 + 318432-318825,318902-319851 47 1e-05
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 47 1e-05
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 47 1e-05
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 47 1e-05
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 46 2e-05
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 46 3e-05
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 46 3e-05
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 46 3e-05
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 31 0.70
12_02_0905 - 24188563-24189189,24189648-24190577 29 3.8
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167 29 3.8
12_01_0200 - 1483266-1483956,1484023-1484134,1484659-1484957,148... 28 5.0
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 28 5.0
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + E+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATADDEGEY 436
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + E+
Sbjct: 425 DEMEFTEAESNMNDLVSEYQQYQDATADEEGEY 457
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLVSEYQQY+
Sbjct: 584 DEMEFTEAESNMNDLVSEYQQYQ 606
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLVSEYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQ 426
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTD 486
DEMEF EAESN+NDLV+EYQQY+ + D
Sbjct: 420 DEMEFTEAESNMNDLVAEYQQYQDATAEDD 449
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLV+EYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVAEYQQYQ 426
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLV+EYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVAEYQQYQ 426
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLV+EYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVAEYQQYQ 426
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 392 HFRSEIALTLHSKGYLGGVVISI 324
H R IALTLHS+ Y+G V S+
Sbjct: 219 HVREVIALTLHSRAYVGACVASL 241
>12_02_0905 - 24188563-24189189,24189648-24190577
Length = 518
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 437 GARPAPTPPGLLGRTRCPSSAVASGTVGTQTPDR*RC 547
GA AP P LGR RCP +A VG +C
Sbjct: 437 GAVTAPMMPFGLGRRRCPGEGLAVRVVGVSVAALVQC 473
>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
Length = 314
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 592 HRRGHGTRWSSTKQRATSTIWCLSTNSTGGHRGRR 488
HR G G R +S AT +W +S G RGRR
Sbjct: 42 HRGGGGGRDTSAFFAATLVLWAVSVGFEIGARGRR 76
>12_01_0200 -
1483266-1483956,1484023-1484134,1484659-1484957,
1485203-1485265,1485721-1486010
Length = 484
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = -3
Query: 237 CDLALRPVIRLTSLKVQSNGKKSLLNII 154
C++ +R V+R+T K++SN +KS+ +++
Sbjct: 411 CEMDIRIVVRVTREKMESNEEKSIEDLV 438
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 446 PAPTPPGLLGRTRCPS 493
P P PP LLG RCPS
Sbjct: 153 PQPPPPRLLGDLRCPS 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,001
Number of Sequences: 37544
Number of extensions: 235948
Number of successful extensions: 816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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