Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1171
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     49   3e-06
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     49   3e-06
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     49   3e-06
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 43   2e-04
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)             43   2e-04
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     32   0.41 
SB_21315| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   28   5.0  
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
           DEMEF EAESN+NDLVSEYQQY+    + + EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATAEEEGEF 436


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
           DEMEF EAESN+NDLVSEYQQY+    + + EF
Sbjct: 349 DEMEFTEAESNMNDLVSEYQQYQDATAEEEGEF 381


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
           DEMEF EAESN+NDLVSEYQQY+    + + EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATAEEEGEF 436


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
           DEMEF EAESN++DL++EYQQY+
Sbjct: 169 DEMEFTEAESNMHDLIAEYQQYQ 191


>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
          Length = 271

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
           DEMEF EAESN++DL++EYQQY+
Sbjct: 231 DEMEFTEAESNMHDLIAEYQQYQ 253


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = -1

Query: 554 AESNVNDLVSEYQQY 510
           A+SN+NDL+SEYQQY
Sbjct: 259 ADSNLNDLISEYQQY 273


>SB_21315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 598 LVHRRGHGTRWSSTKQRATSTIWCLSTNSTGGHRGRRT 485
           ++H +  G  W  T  +    +W  +T+ T G   RRT
Sbjct: 277 VIHNKTDGNLWRHTAHKTDDNLWRHTTHKTDGSLWRRT 314


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQ 513
           D  +F EA++++ DL+S YQQ
Sbjct: 309 DSQQFEEADNDILDLISTYQQ 329


>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 380 RFESELQRS**GSEVRSSHGARPAPTPPGLLGRTRCPSS 496
           R+  E         +++  G RP P PPG  GR RC S+
Sbjct: 824 RYSGEYSSGEEEGNMKADTGIRPKP-PPGRAGRGRCVSA 861


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,192
Number of Sequences: 59808
Number of extensions: 273419
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)