Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1171
(599 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M20419-1|AAA28989.1| 447|Drosophila melanogaster protein ( D.me... 52 8e-07
BT003242-1|AAO24999.1| 447|Drosophila melanogaster LD43681p pro... 52 8e-07
AE013599-2894|AAN16132.2| 375|Drosophila melanogaster CG9277-PD... 52 8e-07
AE013599-2893|AAN16133.1| 375|Drosophila melanogaster CG9277-PC... 52 8e-07
AE013599-2892|AAF57556.1| 456|Drosophila melanogaster CG9277-PA... 52 8e-07
AE013599-2891|AAF57555.1| 447|Drosophila melanogaster CG9277-PB... 52 8e-07
AY118611-1|AAM49980.1| 457|Drosophila melanogaster LP10436p pro... 50 3e-06
AE014297-4213|AAF56770.2| 522|Drosophila melanogaster CG4869-PA... 50 3e-06
M20420-1|AAA28991.1| 446|Drosophila melanogaster protein ( D.me... 49 4e-06
AY118725-1|AAM50585.1| 446|Drosophila melanogaster GH02051p pro... 49 4e-06
AE014297-930|AAF54373.1| 446|Drosophila melanogaster CG9359-PA ... 49 4e-06
X16826-1|CAA34726.1| 435|Drosophila melanogaster 60C beta tubul... 47 2e-05
M22335-1|AAA28993.1| 454|Drosophila melanogaster protein ( D.me... 47 2e-05
BT015991-1|AAV36876.1| 454|Drosophila melanogaster RE53159p pro... 47 2e-05
AE013599-3851|AAF47193.2| 454|Drosophila melanogaster CG3401-PA... 47 2e-05
DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398890-1|ABD61606.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 8.4
AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA... 28 8.4
>M20419-1|AAA28989.1| 447|Drosophila melanogaster protein (
D.melanogaster beta-1 tubulin mRNA, complete cds. ).
Length = 447
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADEDAEF 436
>BT003242-1|AAO24999.1| 447|Drosophila melanogaster LD43681p
protein.
Length = 447
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADEDAEF 436
>AE013599-2894|AAN16132.2| 375|Drosophila melanogaster CG9277-PD,
isoform D protein.
Length = 375
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 332 DEMEFTEAESNMNDLVSEYQQYQEATADEDAEF 364
>AE013599-2893|AAN16133.1| 375|Drosophila melanogaster CG9277-PC,
isoform C protein.
Length = 375
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 332 DEMEFTEAESNMNDLVSEYQQYQEATADEDAEF 364
>AE013599-2892|AAF57556.1| 456|Drosophila melanogaster CG9277-PA,
isoform A protein.
Length = 456
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 413 DEMEFTEAESNMNDLVSEYQQYQEATADEDAEF 445
>AE013599-2891|AAF57555.1| 447|Drosophila melanogaster CG9277-PB,
isoform B protein.
Length = 447
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADEDAEF 436
>AY118611-1|AAM49980.1| 457|Drosophila melanogaster LP10436p
protein.
Length = 457
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDL+SEYQQY+ + EF
Sbjct: 404 DEMEFTEAESNMNDLISEYQQYQEATADDEVEF 436
>AE014297-4213|AAF56770.2| 522|Drosophila melanogaster CG4869-PA
protein.
Length = 522
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDL+SEYQQY+ + EF
Sbjct: 469 DEMEFTEAESNMNDLISEYQQYQEATADDEVEF 501
>M20420-1|AAA28991.1| 446|Drosophila melanogaster protein (
D.melanogaster beta-2 tubulin mRNA, complete cds. ).
Length = 446
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADEEGEF 436
>AY118725-1|AAM50585.1| 446|Drosophila melanogaster GH02051p
protein.
Length = 446
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADEEGEF 436
>AE014297-930|AAF54373.1| 446|Drosophila melanogaster CG9359-PA
protein.
Length = 446
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADEEGEF 436
>X16826-1|CAA34726.1| 435|Drosophila melanogaster 60C beta tubulin
protein.
Length = 435
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 391 DEMEFTEAESNMNDLVSEYQQYQE--ATADDEF 421
>M22335-1|AAA28993.1| 454|Drosophila melanogaster protein (
D.melanogaster beta-3 tubulin gene, exons 2, 3 and 4. ).
Length = 454
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 410 DEMEFTEAESNMNDLVSEYQQYQE--ATADDEF 440
>BT015991-1|AAV36876.1| 454|Drosophila melanogaster RE53159p
protein.
Length = 454
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 410 DEMEFTEAESNMNDLVSEYQQYQE--ATADDEF 440
>AE013599-3851|AAF47193.2| 454|Drosophila melanogaster CG3401-PA
protein.
Length = 454
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ D EF
Sbjct: 410 DEMEFTEAESNMNDLVSEYQQYQE--ATADDEF 440
>DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398890-1|ABD61606.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1
protein.
Length = 2043
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 656 EAVSMSNTSPSESSTEQKSRRFQCELS 682
>AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA
protein.
Length = 2249
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 306 EAKSRANTRPSVPGGPTTSRNFQCDLA 226
EA S +NT PS SR FQC+L+
Sbjct: 713 EAVSMSNTSPSESSTEQKSRRFQCELS 739
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,554,939
Number of Sequences: 53049
Number of extensions: 401025
Number of successful extensions: 1382
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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