Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1171
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical pr...    48   4e-06
X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin pr...    47   9e-06
U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory ...    47   9e-06
Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical p...    46   2e-05
Z78200-11|CAB01587.2|  426|Caenorhabditis elegans Hypothetical p...    38   0.007
Z78198-13|CAB01575.2|  426|Caenorhabditis elegans Hypothetical p...    38   0.007
Z72506-7|CAA96620.2|  293|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical
           protein C54C6.2 protein.
          Length = 444

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTE 480
           DEMEF EAESN+NDLVSEYQQY+    + D E
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATAEEDGE 435


>Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical
           protein B0272.1 protein.
          Length = 444

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
           DEMEF EAESN+NDLVSEYQQY+      + EF
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEATADDEGEF 436


>Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical
           protein C36E8.5 protein.
          Length = 450

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTE 480
           DEMEF EAESN+NDL+SEYQQY+    + D +
Sbjct: 404 DEMEFTEAESNMNDLISEYQQYQEATAEDDVD 435


>X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin
           protein.
          Length = 441

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTD 486
           DEMEF EAESN+NDLVSEYQQY+      D
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEAAADED 433


>U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory
           abnormality protein7 protein.
          Length = 441

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTD 486
           DEMEF EAESN+NDLVSEYQQY+      D
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEAAADED 433


>Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical
           protein K01G5.7 protein.
          Length = 449

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
           DEMEF EAESN+NDL+SEYQQY+
Sbjct: 404 DEMEFTEAESNMNDLISEYQQYQ 426


>Z78200-11|CAB01587.2|  426|Caenorhabditis elegans Hypothetical
           protein T04H1.9 protein.
          Length = 426

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRR 504
           +E EF +AE+ VNDL+SE+QQY +
Sbjct: 399 EESEFTDAENKVNDLISEFQQYEK 422


>Z78198-13|CAB01575.2|  426|Caenorhabditis elegans Hypothetical
           protein T04H1.9 protein.
          Length = 426

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -1

Query: 575 DEMEFNEAESNVNDLVSEYQQYRR 504
           +E EF +AE+ VNDL+SE+QQY +
Sbjct: 399 EESEFTDAENKVNDLISEFQQYEK 422


>Z72506-7|CAA96620.2|  293|Caenorhabditis elegans Hypothetical
           protein F07A5.6 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 416 SEVRSSHGARPAPTPPGLLGRTRCPSSA 499
           + +R S   R  PTPP L    RCPS+A
Sbjct: 30  THLRRSSSPRILPTPPPLSPEYRCPSAA 57


>Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical
           protein F56F3.4 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 416 SEVRSSHGARPAPTPPGLLGRTRCPSSAVASGT 514
           SE+ S+    P  TPPG L      SS V+SG+
Sbjct: 185 SEIGSAQTFSPVATPPGELSSPSTVSSHVSSGS 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,520
Number of Sequences: 27780
Number of extensions: 196375
Number of successful extensions: 599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)