Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1171
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = +2

Query: 416 SEVRSSHGARPAPTPPGLLGRTRCPSSAVASGTVGTQTPDR*RCSLLR 559
           S+V+  HG+ P          T C    V   T G +     +C +L+
Sbjct: 269 SDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQ 316


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 278 RVSPADRRHLETFNAISHYD 219
           R+  ++R   E  NAI HYD
Sbjct: 121 RLRYSNRSQYEFLNAIHHYD 140


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 278 RVSPADRRHLETFNAISHYD 219
           R+  ++R   E  NAI HYD
Sbjct: 121 RLRYSNRSQYEFLNAIHHYD 140


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 278 RVSPADRRHLETFNAISHYD 219
           R+  ++R   E  NAI HYD
Sbjct: 172 RLRYSNRSQYEFLNAIHHYD 191


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 278 RVSPADRRHLETFNAISHYD 219
           R+  ++R   E  NAI HYD
Sbjct: 121 RLRYSNRSQYEFLNAIHHYD 140


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 422  VRSSHGARPAPTPPGL 469
            +++ HG +  PTP GL
Sbjct: 1250 IKTLHGLKVIPTPAGL 1265


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 596 GTPARAWDEMEFNEAESNVNDLVSEYQQYRRPPRKTDT 483
           G    A DE  F+E +S +   +S + +Y      T+T
Sbjct: 199 GKDVLATDERSFSEHDSVMLGEISPHHEYYDSKSSTET 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,222
Number of Sequences: 438
Number of extensions: 2425
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)