Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1171
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 48 6e-06
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 47 8e-06
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 47 8e-06
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 47 1e-05
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 47 1e-05
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 47 1e-05
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 46 2e-05
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 46 3e-05
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 46 3e-05
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot... 32 0.33
At5g50860.1 68418.m06302 protein kinase family protein contains ... 29 2.4
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 28 4.1
At3g53980.2 68416.m05965 protease inhibitor/seed storage/lipid t... 28 5.4
At3g53980.1 68416.m05964 protease inhibitor/seed storage/lipid t... 28 5.4
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + E+
Sbjct: 405 DEMEFTEAESNMNDLVSEYQQYQDATADEEDEY 437
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + E+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATADDEGEY 436
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLVSEYQQY+ + E+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATADEEGEY 436
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLVSEYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQ 426
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLVSEYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQ 426
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLVSEYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQ 426
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYRRPPRKTDTEF 477
DEMEF EAESN+NDLV+EYQQY+ + E+
Sbjct: 405 DEMEFTEAESNMNDLVAEYQQYQDATADEEGEY 437
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLV+EYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVAEYQQYQ 426
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = -1
Query: 575 DEMEFNEAESNVNDLVSEYQQYR 507
DEMEF EAESN+NDLV+EYQQY+
Sbjct: 404 DEMEFTEAESNMNDLVAEYQQYQ 426
>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 {Homo sapiens}; contains
Pfam profile PF01369: Sec7 domain
Length = 1756
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 332 ISILLVCN*RLSRVLTPGRV-SPADRRHLETFNAISHY 222
I++L +C RL+ L PG V P D ETF+ HY
Sbjct: 1211 IALLRICEDRLAEGLIPGGVLKPVDGNEDETFDVTEHY 1248
>At5g50860.1 68418.m06302 protein kinase family protein contains
PF00069: Protein kinase domain
Length = 580
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 588 GEGMGRDGVQRSREQRQRSGV*VPTVPEATAE 493
G+G G DG +R R + R+G +P PEA AE
Sbjct: 436 GKGSGIDGARRIRYRGDRTGRAIP-APEANAE 466
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 309 ITHEKDRYDNTPEIALTMQRQCDFASKVSYKGHSK 413
IT E+ +TP + + RQC + + V+ KG ++
Sbjct: 438 ITSEEKNIQDTPALGKVIVRQCGYTAVVNVKGQTQ 472
>At3g53980.2 68416.m05965 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 114
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Frame = +3
Query: 342 PEIALTMQRQCDFASK-VSYK 401
PE+ALT+ ++C+FA++ V YK
Sbjct: 87 PEVALTIPKRCNFANRPVGYK 107
>At3g53980.1 68416.m05964 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 114
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Frame = +3
Query: 342 PEIALTMQRQCDFASK-VSYK 401
PE+ALT+ ++C+FA++ V YK
Sbjct: 87 PEVALTIPKRCNFANRPVGYK 107
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,339
Number of Sequences: 28952
Number of extensions: 178382
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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