Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1169
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    28   1.3  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    26   5.4  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.5  

>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 598 EMSLHNLMRIRQIVSIEIIMLSLPLSVVNVFNLEKCL*EIDVSRRSN 458
           ++S HN +R+R++ ++++  LS  LS + +    +     D+SR  N
Sbjct: 36  KLSFHNTLRVRELTNVQLTTLSQLLSGMTIEGDLRRQRNADISRLVN 82


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 80  LVIILNLSDKLFDGNLIETLDDLTKDPLSTDCFFS 184
           L++ +N+SD LF  +L        K     DCF+S
Sbjct: 5   LLLSVNISDSLFTFSLKPLFSQYRKHIYFNDCFYS 39


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 397 VFRKVSQRAIGPNVILSRRTC 459
           +FR + +R   P+ +LSRR+C
Sbjct: 244 LFRNLQKRGKSPSFVLSRRSC 264


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 241 LPSDCLSNLFTRLLNVFSVRVEYQRSYAIATT*YESDDDILQRFYFRSLNKHVFRK 408
           LP DC+ ++ + +LN F     Y+  YA     Y ++  I Q     +L++   +K
Sbjct: 327 LPLDCIVSILSSILNFFLRCYPYKPQYADRVFQYINEHIINQPSLRSALHERPLQK 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,685
Number of Sequences: 5004
Number of extensions: 45212
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)