Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1169
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0051 + 11683636-11684046                                         29   4.2  
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247...    29   4.2  
06_01_0613 + 4439829-4439917,4440650-4440738,4441219-4441453,444...    28   5.6  
10_08_0922 - 21593030-21593225,21593319-21594142                       28   7.4  
09_03_0192 + 13344558-13344942,13345038-13345591                       28   7.4  
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    28   7.4  
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822...    27   9.8  

>08_02_0051 + 11683636-11684046
          Length = 136

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = -2

Query: 217 RAAGDRGGWEKGEK----TVGRKR 158
           R  GD GGW++GEK     VGRK+
Sbjct: 54  RPGGDGGGWQRGEKGWLAVVGRKQ 77


>05_04_0312 -
           20123892-20124085,20124183-20124508,20124728-20124732,
           20125063-20125670,20125744-20125884,20126067-20126194,
           20126288-20126329,20126613-20126755
          Length = 528

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 QPLSRDSYLDSLPSDCLSNLFTRLLNVFSVRVEYQRSYAIAT 333
           QP   D+ ++ + +DCL  LF    ++ +++ EY +   ++T
Sbjct: 370 QPPHSDAEINEMANDCLKKLFPAADDLTAIKAEYAKFSLLST 411


>06_01_0613 +
           4439829-4439917,4440650-4440738,4441219-4441453,
           4441768-4441771,4441829-4441930
          Length = 172

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 197 GLGEGRKNSRSKAGPL*DRRASRSSYHRTIYL 102
           GLG GR+ SRS++     R     SY R IY+
Sbjct: 110 GLGSGRRRSRSRSRSRSPRYRRSPSYGRRIYI 141


>10_08_0922 - 21593030-21593225,21593319-21594142
          Length = 339

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 154 GPAFDRLFFLPSPNPLCPQPLSRDSYLDSLPSDCLSNLFTRLLNVFSVRVEYQRSYAIAT 333
           G A   L FLP  N L  +P+   +Y D+   + +  +     NV   RV +    A A 
Sbjct: 99  GDADPALRFLPCTNALLAEPVEGLAYFDAHRDEVMEGVSDVYRNV--CRVIFDDGVAAAV 156

Query: 334 T*YESDDD 357
              + DDD
Sbjct: 157 AAADDDDD 164


>09_03_0192 + 13344558-13344942,13345038-13345591
          Length = 312

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 56  KKFIAVFGLVIILNLSDKLFDGNLIETLDDLTKDPLSTDCFFSLL 190
           K+   +  + +  NL D  F GN   T DD+  D   +DC  SLL
Sbjct: 235 KELAGIAKIFVDNNLKDSDFHGN---TYDDIHSDSSPSDCSVSLL 276


>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 284 TSSPCVSSTKEATLSPRLNTNQTTIFSKDSTS 379
           +SSP  +S   A+  PRL T+QTT  S  STS
Sbjct: 684 SSSPATASAAAASKKPRLLTSQTTT-SHTSTS 714


>03_05_1076 +
           30180923-30181150,30181746-30181913,30182063-30182281,
           30182827-30182872,30183708-30183943,30184065-30184079,
           30185749-30186061,30186189-30186403,30186598-30186600
          Length = 480

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 322 RSFFGTRHARRRRSITE*KDY*DNQTEANLNKNLVRAAGDRGGWEKGEKTVGRKRVLCEI 143
           RS    +H RRR   ++  D  D ++  +    L  AAGD    E+ ++ +G + +    
Sbjct: 382 RSKHRRKHQRRRHEFSDDDDDDDEESSGSRKSKLGGAAGDDDDEEEEDEGIGGEELRASD 441

Query: 142 VER 134
           + R
Sbjct: 442 IVR 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,201
Number of Sequences: 37544
Number of extensions: 265737
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)