Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1165
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.3  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.1  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.1  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   7.1  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   9.4  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +3

Query: 87   KKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSLR 215
            K EY DE      E LEKN +  TSL Q I  +Q+    SSLR
Sbjct: 960  KTEY-DEYRLQTSESLEKNHLKITSLEQRIVILQDEIASSSLR 1001


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  RIQR*INQVYRRNVGKERCILHFTNSGYSM 181
           R+ + +N    R    E+C+L  T  GYS+
Sbjct: 132 RLLQIVNNPSARKFSNEKCLLQLTRKGYSV 161


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 277 RQRTERLTLTSHLSCFHSWKSRS 209
           +Q+   L LTS L  F+SW S S
Sbjct: 225 KQKASSLKLTSSLKKFYSWTSSS 247


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 4   FSDTTSTVITQPTALP*ASTSTPPGLNLKK 93
           FSD T+TV+TQ   +P  S+      +LK+
Sbjct: 527 FSDLTTTVLTQKQVIPFFSSMELANFHLKQ 556


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 81  KSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDKCD 248
           K+K++   E I  +EE      +   S  +  Q M+   + + LRD Q+ +Q K +
Sbjct: 55  KAKEKKEKERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,743
Number of Sequences: 5004
Number of extensions: 54192
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)